XLOC_014687 (BX927404.1)


Basic Information

Item Value
gene id XLOC_014687
gene name BX927404.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18484706 ~ 18485881 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029022
AGTTTCAACAGACACATCGGGTGTCCTAGCCTGCTGCATTGAGACACAAAATACATCTTCATTTCTCCGTTTATGCTCTCAACATTATCACAAAGCCAAGCTGCATATGAGATGATGGAGACTGACCCAGACTGACCACCATCTCTGCATCTGGGCCACACAGAAACTACACAGACAGACACTACACACTCTGCAAGACTAGCTAAGAGGAGGGAAAGAAAATCAACACTGCAGTCAGCTGTAGATGTGGACAAACAACATGCAGAGAAGGAGATACTTGAGGTTGAAGATGGTGAGAGACACTGATGAGAAGACACACAACACTAAGGAGGTAACTGAGACAAACTGAATGTAAATTGTGTATGGACAAGTGTAGAAGTAAACCGCCTGTTGGAGAAGAACTGACAGCAGCTGTGTGAACTTGAAGAATACAGGATGTCTCATGGATTTTGTAACAAGAATGATGCTAACGTACCAAACAGTAAATAAACACAAAGCACTGAACCATAAAAATGATACTCCCTTGTGAAGGTGAAGATGTCACATTACAGCATAGGATTGTAACTGTC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0007379 segment specification biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029022 True 569 lncRNA 0.42 2 18484706 18485881

Neighbor

gene id symbol gene type direction distance location
XLOC_014685 zgc:112966 coding downstream 65943 18417093 ~ 18418763 (-)
XLOC_014684 BX649471.2 coding downstream 119741 18363317 ~ 18364965 (-)
XLOC_014683 BX649471.3 coding downstream 169385 18314328 ~ 18315321 (-)
XLOC_014682 si:dkey-208k4.2 coding downstream 171325 18310386 ~ 18313381 (-)
XLOC_014681 nfe2l3 coding downstream 331764 18143593 ~ 18152942 (-)
XLOC_014688 FP085400.1 coding upstream 110905 18596786 ~ 18597326 (-)
XLOC_014689 rps18 coding upstream 131727 18617608 ~ 18627025 (-)
XLOC_014690 st3gal1l3 coding upstream 171148 18657029 ~ 18682510 (-)
XLOC_014691 NA coding upstream 258096 18743977 ~ 18753193 (-)
XLOC_014692 NA coding upstream 263724 18749605 ~ 18750318 (-)
XLOC_014711 CR382300.3 misc upstream 1242809 19728690 ~ 19728755 (-)
XLOC_014680 NA non-coding downstream 344812 18137714 ~ 18139894 (-)
XLOC_014677 CR391921.1 non-coding downstream 488370 17834204 ~ 17996336 (-)
XLOC_014673 NA non-coding downstream 1129973 17353644 ~ 17354733 (-)
XLOC_014693 NA non-coding upstream 346187 18832068 ~ 18844413 (-)
XLOC_014694 FP074902.5 non-coding upstream 352530 18838411 ~ 18838541 (-)

Expression


Co-expression Network