XLOC_014704


Basic Information

Item Value
gene id XLOC_014704
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19459051 ~ 19461297 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030203
AATGCTCCCAAccttgaaaaaaaagaaaaaagtttcacagaagaaaaaaacgaCTCGCTCTTCGTTGCGAGGGCAAACGCAAGCCCAACCTACCGCCATAGTAGAATTACCTGAATTCTCCTCACGTGACCGATCCCCAGCCGGTCGACCAATGAGAAGAGAGGACAGGTGCACTCATTGTAGTTTCGGAGGTGGAATCCCGGGTACTCTTGTAAACTGCGACGGCACTATAAAGTCTTTCACGTAAGTTCAATTTTTGCGTGGCATATTCAGAACCTCCTCCAGGTGATGTTGGGCTAAGGATGATGTTATGCTTTCTCAGAGACATAGATATCCACTCAACCGAGTTATGCGCAAAACTGCGTCTCATTGATTGACATCTTCGGATACGTGGGAGTGAAAGATGGTTTTCACACACCGTGATTTCTTCTGAAGAAGATTCAGCGTCTCTTCTctgttgtctcaacacaccttTCATTTAGAGGAACGTCGGGCTGCGTTTATCTTCTTCTCGTCATTTTTATCCAGTTTTAACAATGACGGAGAAAACAGCTCCCTGGTGGAGATCTTTCGTGGGCAAGAGGAGAAAAGCAGCCAGAGAATCGGCAGCGACCCTTGAGCAGGACCTCCGTAATCAGCCATCTGCAGAATCCAAGCAGCAACCCTCTGCTGAGCCGGACCAACGACTCACCTCACAGACCCGTCCAGTGATACAAGCAGGCAACAACCTACCTAGCGACGAAACATACGACGACTCCGCTGTTCAACCCACTTTCAACGAGCTCAACAATCGCCGTTTTCTCACTGTATCGCGCTCCGGCCGCTTCAAAGAGAAAAAGAAGTCGCGAGCGAGTTTTCCACAGAACCACGAAGACGAAGGGAAACCTGTCGCCGCCAAACCAACCGAAGTTCAGTCAAAGCGTTGATTGCAGCCGCAGTTTACATCCGTTGGTAGAGCCATAAGGCACTACCTTCATACTGACAATGTTGATTAACTTGACTCATAAATGCACTTACTGATATTGTGGTGATAGACTGTTGGACTAATTTATTATTGGAGCTTTTCTCCAAATGCTGGAAAAATGGCTTTTCCTTGAGGATAAAACGGCTCTTAGCCAAGCAGGTTTAAATGGGTTTACAGGCACTTTACAACTTGAGATCAGCTAGGTCAGCGTAAACCTGGTAAGACCAGCAAActataagctgtttttttttctccaccaggGAAAATACATTCAATAGAATAATATTTGTGAAGGATACAACAcattatttttagacatttgttATAGCTAGGCCTACAACATTTGCACTGTATTATGGTGTTACTGCAACATTTTATGAAGGACTATATACGAAGGATTGAGCAGAAACTATTTTAAAGATAATCAGTGTAAGGTCTATCATGGCTGTTTTGAATGGTTGTGCATGCATGTCACTTTTTTGAGCGGGTTTGGGTGGTGGTCCTATCCGTCCagaattaaatgtttttacttt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048732 gland development biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030203 True 1497 lncRNA 0.44 2 19459051 19461297

Neighbor

gene id symbol gene type direction distance location
XLOC_014703 wipf3 coding downstream 12522 19437648 ~ 19446529 (-)
XLOC_014702 smarcc1b coding downstream 79967 19342177 ~ 19379084 (-)
XLOC_014701 NA coding downstream 119714 19275813 ~ 19339337 (-)
XLOC_014700 dync1li1 coding downstream 433023 18989911 ~ 19026028 (-)
XLOC_014699 FP067442.1 coding downstream 505845 18942726 ~ 18953206 (-)
XLOC_014705 creb5a coding upstream 35182 19496479 ~ 19505167 (-)
XLOC_014706 NA coding upstream 49260 19510557 ~ 19512337 (-)
XLOC_014707 tax1bp1a coding upstream 87765 19549062 ~ 19599372 (-)
XLOC_014708 BX601646.1 coding upstream 135308 19596605 ~ 19664743 (-)
XLOC_014709 CR382300.5 coding upstream 248630 19709927 ~ 19710042 (-)
XLOC_014711 CR382300.3 misc upstream 267393 19728690 ~ 19728755 (-)
XLOC_014698 FP074902.1 non-coding downstream 578927 18879002 ~ 18880124 (-)
XLOC_014697 NA non-coding downstream 595847 18860056 ~ 18863204 (-)
XLOC_014695 FP074902.3 non-coding downstream 617508 18841413 ~ 18841543 (-)
XLOC_014712 NA non-coding upstream 277482 19738779 ~ 19740396 (-)
XLOC_014713 NA non-coding upstream 318850 19780147 ~ 19786187 (-)
XLOC_014716 NA non-coding upstream 676382 20137679 ~ 20143137 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G458122 NA unknown CI01000321 null 1032063 ~ 1036148 (-)
tiger barb (Puntius tetrazona) LOC122323308 LOC107748748,LOC107592064,LOC107710321,LOC107688414,LOC107602392 misc NC_056717.1 CM032086.1 15644862 ~ 15648579 (-)