XLOC_014705 (creb5a)


Basic Information

Item Value
gene id XLOC_014705
gene name creb5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19496479 ~ 19505167 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029055
CTTACTGTTTTCCACTGGTACTGTAACCACAAAAGGAAAGAAATACGTGTTTTATTTGGTTGGCCGTCGGAAAAAACAAACGTCTGGTAATCATTTGGATATACGGGTTAAGCCAGCAGTTAACGCGCTCATACATGCCCGCTCTCTTCtctttatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatacgtTAATCGGGACCGTCCCGCGCACAGCTCCAGACAGCTGTTGGCGCAGCACGCACGCAGTAAAGCGCCTCCCCTTCCTTTTTTCTCCCTCAACGCTCCAATGTCCGCATCGGACGCCCGCTACATCCTCCGGTGGGCGGGTGCGCGGAGTCTGAAAGCACCTCCTCTTTTTAAAAAGCGGACCGCAATGATTTAGAAGTTCAGGAATCCCACGTGACGTCACCACAAGGTGATGTAATGCTTCTGTAAATAGATCATATTGTAATCGCGTTTCACTTCAGCGTGCTTCGTCCCAGCGCGAGGAGCGTTGCTTGTCTCAGTCTGCGTGCGTTTAGgTCTTTTACATCTCAGATGATGAATGTTGATCAGGACAGGCCATTTGTGTGCATTGCTCCTGGATGCTCGCAGAGCTTCCAAAGAGAAGACCACCTAATCATCCACAGACACAAACATGAGATGACGCTTAAATTCCCTTCTATTAAGTGTGACAGTATGCtttcagATCAGACTCCAACACCAACTCGTTTCTTACGGGACTGTGAGGAAGTGGGCCTCTTTACTGACCTGGAGCTTAACCAGTCTCAGACGGAAGAGCAGACCAAACCGAACTTTTCTGCACAGACGTCAGCTCAGAGGCAGCCTCACACCGAAACACAACCTGAGCAAGGTCAACATCAGCAGTTTCAGCCTCAGCAACAGCAGTCGTGTGCACTGGCCCATCTGAACCAGAACCAGCTCCAGACGCACAGCTCACAGTGTCAGTCTCAATGCACTGCCACATACTCCAGTTCAAATAAGCAATCTGCACCCAGTTGTCTACacagcagacagacaaacacTGTCAAATCAAACATGAATATGGAGTCACAGATGTCAATGAACTCCAGTATTATTGGCATACCAGGACCCGCCCACTCTGGCTCATGCTCCTCCGTTCAGCGGTCAAAGGTCATACCAGCCCACAGCCAACCTGCAGTTTCCAACGGCAGTCAGAATCCTCTTTGCCACATGATGGAGATGATGCCATCACAACCTCACCCATTGTCGCATTTACAATCTGCATCTCATCATCACGCATCATACCAGCAGCACTGCCACAGCCAATCACCACAAAGGCTCGCACATCAGCATCAAAGCCAAGACCAATCACATCACAGCCACGCCCACCACTCCACACCCTCGCACTTGCCTCTTGGCCCCTCCCATCAGAACGCCCCTCCCCTTTCACATCAGCCAATACCTATACAGATGTCTTCCACACCAAAACAGAGCCATTGCCCACAGTCTCCTCCACAGCCGGCCACAGGCAGACGCCGACGGACAGCAGAAGACGACCCGGATGAACGCAGGAGAAAGTTTCTGGAGAGAAACAGAGCTGCTGCTACACGGTGCAGACAGAAAAGAAAAGTCTGGGTGTCGTCGTTGGAGAGGAAGGCTGAGGAACTTACACACACGAACTTGCAGCTACAGAATGAGGTGACATCGCTCAGAACAGAAGTCACTCAACTGAAGCAAATTCTTCTTACACATAAAGACTGTCCTGTATctgtgagacagagagagacgcAAAGTGGTATAGGCAGCCCAACAGGTAGTCCTGTCCATTCACATGCTATCCAACACAACAGCATCTCAACAAGTTCAACTTTACCCCGTGGCCACCtcaccacacactcacactcaactAGCAACACACAGCTATAA

Function

symbol description
creb5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human CREB5 (cAMP responsive element binding protein 5).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120827-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human CREB5 (cAMP responsive element binding protein 5).

Ensembl:

ensembl_id ENSDARG00000099002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029055 True 2013 mRNA 0.50 11 19496479 19505167

Neighbor

gene id symbol gene type direction distance location
XLOC_014704 NA coding downstream 35182 19459051 ~ 19461297 (-)
XLOC_014703 wipf3 coding downstream 49950 19437648 ~ 19446529 (-)
XLOC_014702 smarcc1b coding downstream 117395 19342177 ~ 19379084 (-)
XLOC_014701 NA coding downstream 157142 19275813 ~ 19339337 (-)
XLOC_014700 dync1li1 coding downstream 470451 18989911 ~ 19026028 (-)
XLOC_014706 NA coding upstream 5390 19510557 ~ 19512337 (-)
XLOC_014707 tax1bp1a coding upstream 43895 19549062 ~ 19599372 (-)
XLOC_014708 BX601646.1 coding upstream 91438 19596605 ~ 19664743 (-)
XLOC_014709 CR382300.5 coding upstream 204760 19709927 ~ 19710042 (-)
XLOC_014710 evx1 coding upstream 212804 19717971 ~ 19871211 (-)
XLOC_014711 CR382300.3 misc upstream 223523 19728690 ~ 19728755 (-)
XLOC_014699 FP067442.1 non-coding downstream 543273 18942726 ~ 18953206 (-)
XLOC_014698 FP074902.1 non-coding downstream 616355 18879002 ~ 18880124 (-)
XLOC_014697 NA non-coding downstream 633275 18860056 ~ 18863204 (-)
XLOC_014712 NA non-coding upstream 233612 19738779 ~ 19740396 (-)
XLOC_014713 NA non-coding upstream 274980 19780147 ~ 19786187 (-)
XLOC_014716 NA non-coding upstream 632512 20137679 ~ 20143137 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_01057908_01060166 NA coding CI01000321 null 1057730 ~ 1060497 (-)