XLOC_014714 (mpp6b)


Basic Information

Item Value
gene id XLOC_014714
gene name mpp6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 20061892 ~ 20106486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029071
TGGCATTGTGTGTGTCCGAATAGTTAGCCACGGGACCCACGACTACCGAAAGCTTTGAATATCTGACCGGGACGACTGGAGCGGACTCGGGACAACCCAGATTTAATACTGGTCTGGAACAGTGGACGAGAAGTTTGTAGCAGCTCGTGGAGGGAACAGGAACAGCATCGGCCACAACTATGCAGCAGGTGTTGGATAACCTGGGCGAGTTGCCCTCCACCACCGGGGCTAAAGACATTGACCTCATCTTTCTCAAAGGCATCATGGAGAGTCCCATTGTCCGCTCGCTGGCCAAGGCTCATGAGCGTTTGGAGGATGTGAAGCTGGAAGCAGTGCAGGAGAATAACGTTGAGCTTGTGACTGACATTCTGGGTGACATCAGTGGTCTGAGTGTGCGAGATGACAGCGCTGCTGAGCTCTCCAAAATCCTGCAGGAGCCCCATTTTCAGTCTCTTTTGGAGGCCCATGACATGGTGGCATCAAAATGCTATGAAGCCCCGGCCCCTCCTGAACTGACCAATGATGCGGCAGTAAATAATGCTCTAATGCAGGCTGATGCGGTCAGGATGATTGGGATTCGCAAGAAAGCTGGAGAACCTCTGGGTGTGACCTTCCGAATGGACAAGGGTGACCTAGTGATTGCTCGCATCCTCCACGGAGGGCTGATTGACAGGCAGGGGCTTCTGCACGTGGGTGACATCATTAAGGAAGTGAACGGGAAGGACGTTGGCACTAATCCCACTGAGCTACAGGAGATGCTCAAAGAATGTAGTGGAGGAATAACACTCAAAATATTACCCAGTTACAGAGACGCTCCAGCACCACCACAGGTGTATGTGAAGCCGCATTTTGACTACAATCCAGCCAGCGATAATCTAATTCCATGCAGAGAAGCAGGACTTGCTTTCAAACGGGGGGATATTCTGCAGATTGTCAACCGAGAAGATCCCAACTGGTGGCAGGCATGTCATTTAGCAGAAGGAGGCACTGGGCTGATTCCCAGTCAGTTTCTAGAGGAAAAGAGGAAAGCATTTGTTCCTAGAGACCTGGATGGAGCAGGAATCTTATGTGGAACAATGACtggtaaaaagaagaaaaagatgaTGTACCTTACTGCCAAAAATGCAGAGTTTGACCGTCACGAGCTTCAGATTTATGAAGAGGTAGCTCGTATGCCACCGTTTCAGAGGAAAACCCTCATTCTGATTGGAGCGCAGGGAGTGGGCCGCCGCAGCCTGAAAAACAGACTAGTTGTACTGCATCCCACCCGCTTTGGCACCACTGTACCACACACATCTCGACGGCCGCGCAATGACGAGCGAGATGGTCAGTCGTACAGATTTGTGACCCGTCTTGAGATGGAAACTGACATCAAATTGGGACGGTACCTGGAACACGGAGAGTACGACGGAAACCTCTATGGTACTAAAATTGACTCCATCCATGAGGTGGTGAACACTGGACGCACATGTATCCTGGACGTCAACCCTCAGGCTCTGAAGCTGTTAAAAACACCAGAGTTCATGCCGTATGTCGTGTTCATTGCAGCGCCAGAGTTCGACACGCTGAAGGATATGCACAAAGCTGTGGTGGATGCAGGACTGACCACCAAACAACTCGCAGATGTGGACCTGAAGAAGACAGTGGATGAAAGCGCTCGTATCCTGCGGGCTTACAGACACTACTTTGACCTCATCATTGTCAATGACAACTTAGACTGTGCGTTCGAGAAGCTGCAGTCATCTGTGGAGGAACTGTGTACTGAACCACAGTGGGTTCCAGTGAGCTGGGTTTACTGAGGGCACCTTCAGAACATCActatacgagtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgcgtgtgattgATATCTAAGATGACTGATGTGAGCCAGAATGAAGATATGCATTTGGATTGACCAACAAAAAGAGCTTCTTCCCACAAAAGCACAGTTTGCCCCAACCTCTCTTTTTTGTGAACACGATGCAAGATGTTTTTTCTACTTAAACTCAAAGGGAAgagtacttatttattttagtatttgtatgtttttaataaaacttacTGTTTTGGAGTCCAAA
>TCONS_00029072
TCGTGGAGGGAACAGGAACAGCATCGGCCACAACTATGCAGCAGGTGTTGGATAACCTGGGCGAGTTGCCCTCCACCACCGGGGCTAAAGACATTGACCTCATCTTTCTCAAAGGCATCATGGAGAGTCCCATTGTCCGCTCGCTGGCCAAGGCTCATGAGCGTTTGGAGGATGTGAAGCTGGAAGCAGTGCAGGAGAATAACGTTGAGCTTGTGACTGACATTCTGGGTGACATCAGTGGTCTGAGTGTGCGAGATGACAGCGCTGCTGAGCTCTCCAAAATCCTGCAGGAGCCCCATTTTCAGTCTCTTTTGGAGGCCCATGACATGGTGGCATCAAAATGCTATGAAGCCCCGGCCCCTCCTGAACTGACCAATGATGCGGCAGTAAATAATGCTCTAATGCAGGCTGATGCGGTCAGGATGATTGGGATTCGCAAGAAAGCTGGAGAACCTCTGGGTGTGACCTTCCGAATGGACAAGGGTGACCTAGTGATTGCTCGCATCCTCCACGGAGGGCTGATTGACAGGCAGGGGCTTCTGCACGTGGGTGACATCATTAAGGAAGTGAACGGGAAGGACGTTGGCACTAATCCCACTGAGCTACAGGAGATGCTCAAAGAATGTAGTGGAGGAATAACACTCAAAATATTACCCAGTTACAGAGACGCTCCAGCACCACCACAGGTGTATGTGAAGCCGCATTTTGACTACAATCCAGCCAGCGATAATCTAATTCCATGCAGAGAAGCAGGACTTGCTTTCAAACGGGGGGATATTCTGCAGATTGTCAACCGAGAAGATCCCAACTGGTGGCAGGCATGTCATTTAGCAGAAGGAGGCACTGGGCTGATTCCCAGTCAGTTTCTAGAGGAAAAGAGGAAAGCATTTGTTCCTAGAGACCTGGATGGAGCAGGAATCTTATGTGGAACAATGACtggtaaaaagaagaaaaagatgaTGTACCTTACTGCCAAAAATGCAGAGTTTGACCGTCACGAGCTTCAGATTTATGAAGAGGTAGCTCGTATGCCACCGTTTCAGAGGAAAACCCTCATTCTGATTGGAGCGCAGGGAGTGGGCCGCCGCAGCCTGAAAAACAGACTAGTTGTACTGCATCCCACCCGCTTTGGCACCACTGTACCACACACATCTCGACGGCCGCGCAATGACGAGCGAGATGGTCAGTCGTACAGATTTGTGACCCGTCTTGAGATGGAAACTGACATCAAATTGGGACGGTACCTGGAACACGGAGAGTACGACGGAAACCTCTATGGTACTAAAATTGACTCCATCCATGAGGTGGTGAACACTGGACGCACATGTATCCTGGACGTCAACCCTCAGGCTCTGAAGCTGTTAAAAACACCAGAGTTCATGCCGTATGTCGTGTTCATTGCAGCGCCAGAGTTCGACACGCTGAAGGATATGCACAAAGCTGTGGTGGATGCAGGACTGACCACCAAACAACTCGCAGATGTGGACCTGAAGAAGACAGTGGATGAAAGCGCTCGTATCCTGCGGGCTTACAGACACTACTTTGACCTCATCATTGTCAATGACAACTTAGACTGTGCGTTCGAGAAGCTGCAGTCATCTGTGGAGGAACTGTGTACTGAACCACAGTGGGTTCCAGTGAGCTGGGTTTACTGAGGGCACCTTCAGAACATCActatacgagtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgcgtgtgattgATATCTAAGATGACTGATGTGAGCCAGAATGAAGATATGCATTTGGATTGACCAACAAAAAGAGCTTCTTCCCACAAAAGCACAGTTTGCCCCAACCT
>TCONS_00029073
AGAGCAAAATAACCCTTAATCTTGTTTGTATTGTCTCAATATCTCAGACACATCTCGACGGCCGCGCAATGACGAGCGAGATGGTCAGTCGTACAGATTTGTGACCCGTCTTGAGATGGAAACTGACATCAAATTGGGACGGTACCTGGAACACGGAGAGTACGACGGAAACCTCTATGGTACTAAAATTGACTCCATCCATGAGGTGGTGAACACTGGACGCACATGTATCCTGGACGTCAACCCTCAGGCTCTGAAGCTGTTAAAAACACCAGAGTTCATGCCGTATGTCGTGTTCATTGCAGCGCCAGAGTTCGACACGCTGAAGGATATGCACAAAGCTGTGGTGGATGCAGGACTGACCACCAAACAACTCGCAGATGTGGACCTGAAGAAGACAGTGGATGAAAGCGCTCGTATCCTGCGGGCTTACAGACACTACTTTGACCTCATCATTGTCAATGACAACTTAGACTGTGCGTTCGAGAAGCTGCAGTCA
>TCONS_00029074
atgaatgtgtgtgtatgtgtccacATCTGTGTTTGGCAGACGTCTGGATTGCTTTCTCTCCTCTCTTTGTGTGGATGTCTCTTGGCCTCTTTTTTTTGCTCTTCTGGCTTCTGCCAACTTTTAATGGTCATAGTAGTCtacgtttttatttttgttttcattggcAAGTCAACATTTGCGCAGTTCAGTAGAGCAGAGGTCAGATTTGAGAGCAGGAATGATTCTCACTGTGGATGAAACATTCTCAAATGGAGCAGGTTTGAACTCGGATGCCGGGGGCTTTGGAGAAACAGGGGAGGGGGTGTCCGAACTTGATGAGGGCGCAGATCCTTCTGGAGCTATGCAGCAGGTGTTGGATAACCTGGGCGAGTTGCCCTCCACCACCGGGGCTAAAGACATTGACCTCATCTTTCTCAAAGGCATCATGGAGAGTCCCATTGTCCGCTCGCTGGCCAAGGCTCATGAGCGTTTGGAGGATGTGAAGCTGGAAGCAGTGC

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-775 Acts upstream of or within glial cell development and retina development in camera-type eye. Is expressed in epiphysis and retina. Orthologous to human PALS2 (protein associated with LIN7 2, MAGUK family member).

Ensembl:

ensembl_id ENSDARG00000029761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029071 False 2095 mRNA 0.49 13 20061892 20106486
TCONS_00029072 False 1835 mRNA 0.50 12 20062008 20099394
TCONS_00029073 False 499 lncRNA 0.48 3 20062245 20071609
TCONS_00029074 True 497 mRNA 0.49 3 20083718 20093341

Neighbor

gene id symbol gene type direction distance location
XLOC_014710 evx1 coding downstream 190681 19717971 ~ 19871211 (-)
XLOC_014713 NA coding downstream 275705 19780147 ~ 19786187 (-)
XLOC_014712 NA coding downstream 321496 19738779 ~ 19740396 (-)
XLOC_014709 CR382300.5 coding downstream 351850 19709927 ~ 19710042 (-)
XLOC_014708 BX601646.1 coding downstream 397149 19596605 ~ 19664743 (-)
XLOC_014715 npy coding upstream 4213 20110699 ~ 20114149 (-)
XLOC_014716 NA coding upstream 31193 20137679 ~ 20143137 (-)
XLOC_014717 znfl1c coding upstream 37364 20143850 ~ 20148469 (-)
XLOC_014718 NA coding upstream 47184 20153670 ~ 20154323 (-)
XLOC_014719 fam221a coding upstream 52171 20158657 ~ 20163233 (-)
XLOC_014711 CR382300.3 misc downstream 333137 19728690 ~ 19728755 (-)
XLOC_014706 NA non-coding downstream 549555 19510557 ~ 19512337 (-)
XLOC_014704 NA non-coding downstream 600595 19459051 ~ 19461297 (-)
XLOC_014720 NA non-coding upstream 85398 20191884 ~ 20199210 (-)
XLOC_014725 BX927400.1 non-coding upstream 332656 20439142 ~ 20439260 (-)
XLOC_014728 BX511212.1 non-coding upstream 1009925 21116411 ~ 21116543 (-)

Expression


Co-expression Network