XLOC_014733


Basic Information

Item Value
gene id XLOC_014733
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 22034197 ~ 22039502 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030215
caaaagtggaccaggATCAAATAATCCTGCGTCTgtgagtctccgctgatgtcaagaagaaggccaggggttacagtgaaatactgcctttttcCTGCGCCCCTCCtcatcacaagatacctgtctgcaagagATTTCTAAGTGTCttttACTTTGGGATTATGATGTCTGCTTGCACCTTATGGTCTACGGGAAGGTATTGTGGGAACCTAAATAGACGATATGGGCATGGCTTAGTATGCTTAACATGACTAGGGTCCTGCAACAGCGCTACCGGACGTTTCCCTAGCAGATTAAGTGTTCATAGTGAGGAGGCGCAGGAGCTTAAAGTTAAAATCACTAGCAAGTGTGACTTCAAGATCAGATTTTCCTTGGAAACACCAATCATGTTTAAAATCCATGTTGGAGAAGATtggaggggggagaaaaaaaaaatcccagaggAATAAAAGTTGACTTTGAGAGCCTTTGAGTTTCCCGGACAGCCCATCTGCCATAAAACACCATTGTAAAAGCTGGACGCGGGTCTCTAAGATTGATGACTTCAAGTCTTTCAAAAAGCTGTTTGTATAAGTGGAGTTATGCTAAAAATGCAGCAGTGATAATATCACCGCCGTTCATCCGAAACAGAGCATTACCGCAATGATAAACACTGCGTTTGACTTCATGGATTTGATCAGCTGGTGTGTTTGAAATACGGGAAAAAAGTGGGTGGGAAAACATTTGCCTTTCTCCAAAATTAAGTCGTTATTTCACACAGCCATAAATGCGTGTCCTGAGTTACTCTGGCAGTCTCGGCTTCCCGTCAAATCACAATAGACATGTCAGGAGATCATCTTAGAACACAAGCATATCCGCCCCTTTCCCACCACAACACGCCGGAGGATTTACATCTTTCCATATGAGCTTAGCGATGTCATGAAAATCATCCTTTTTATGAGCAAACATCTTTGCTAAGAACTACCATTGTTTTCTGCGGCCACTCCATGCATTTCTACGGCTTTATGTCACCTGTAAAGAAGCAACAGGTCATAAAGCACTTTGTTTTTACAGCCTCTCTGTCTTCCCCCATGAAAAtgacttagattttttttactctcCTACATTGTGGACAGCTGGAGCTTTTCAGGATTTCACTGCATCTTGGTGTGTCCAAGCAATAAGTGTGGGGCCAGTGCAGTAGTCACTGCAGGATTTAAAAAGACTTCCTCATGCAGAAATATTTAATCTCCTTTCAGAAAATAAAAGAGGGAGAGGGGAAAGAAAACCCACCATGAGATTTTCCGTTCTTTATTACTTGTGCAGTATCAAAGAGCTGCAAATCATAGTTGTTGTTTCACCTTTTCTTTAAGTGAAGAAAAGTTTAAGTGTGTAAGTGTTGATATGGAATTTTTTGATGTGATGCAGTGGTTGTGCAAATGCTCTCGAAAATATGTAGTGTTGATATGTTGCAGAGTCCACACATTTTTTCCtccttatttaattttaatttcaatcTACTGTACAGACTTTGCTTTCAAAGTGGTTATACATATttgaataaaagtacaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030215 True 1551 lncRNA 0.41 2 22034197 22039502

Neighbor

gene id symbol gene type direction distance location
XLOC_014732 mbpa coding downstream 201567 21814047 ~ 21832630 (-)
XLOC_014731 znf516 coding downstream 267736 21698149 ~ 21766461 (-)
XLOC_014730 NA coding downstream 666865 21358578 ~ 21367332 (-)
XLOC_014729 BX470117.1 coding downstream 846159 21176257 ~ 21188038 (-)
XLOC_014728 BX511212.1 coding downstream 917654 21116411 ~ 21116543 (-)
XLOC_014734 NA coding upstream 20209 22059711 ~ 22062054 (-)
XLOC_014735 si:ch73-196l6.5 coding upstream 278498 22318000 ~ 22328154 (-)
XLOC_014736 slc52a2 coding upstream 293819 22333321 ~ 22346603 (-)
XLOC_014737 eppk1 coding upstream 321454 22360956 ~ 22387141 (-)
XLOC_014738 pleca coding upstream 368317 22407819 ~ 22621991 (-)
XLOC_014711 CR382300.3 misc downstream 2305442 19728690 ~ 19728755 (-)
XLOC_014725 BX927400.1 non-coding downstream 1594937 20439142 ~ 20439260 (-)
XLOC_014720 NA non-coding downstream 1834987 20191884 ~ 20199210 (-)
XLOC_014740 BX957242.1 non-coding upstream 606680 22646182 ~ 22646299 (-)
XLOC_014742 NA non-coding upstream 926284 22965786 ~ 22969561 (-)
XLOC_014743 BX571825.10 non-coding upstream 1002984 23042486 ~ 23042956 (-)
XLOC_014744 BX571825.3 non-coding upstream 1007298 23046800 ~ 23047282 (-)

Expression


Co-expression Network