XLOC_014739 (eif3eb)


Basic Information

Item Value
gene id XLOC_014739
gene name eif3eb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 22622355 ~ 22664398 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029137
GTAAAATAACTGTAAATAGATTAGTCCTGTGtaatacagaaaaaaagaaaataaaaaaataggagaACCTTTAAATAGTTTGAAGTAGATCCTATTTGTTTGATACCCCCTCCCTCTATatctatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgggACAGAAGCAGCTCACTGTTCTCATCAGTGCtgaaataaagttttttaaacGCTCTTCTTATTTTCAAAATGGCGGAGTACGATCTGACTACCAGAATCGCTCATTTTTTAGACAGGCATTTGGTCTTTCCGTTGCTGGAATTCCTTTCGGTCAAAGAGATCTACAATGAGAAAGAACTTCTCCAAGGGAAGCTGGATCTTCTCAGCGAAACAAACATGGTGGACTTTGCAATGGATGTATATAAGAACCTCTATCCTGACAAAGAAATTCCACACTCCTTGAGGGACAAAAGAACCACAGTGGTGGCCCAGCTAAAGCAGCTCCAGTCTGAAACGGAACCCATAGTGAAGATGTTTGAAGATCCAGAGACTCAGAGACAGATGCAGTCCACCAGAGATGGAAGGATGCTGTTTGAATATTTAGCAGACAAACATAGTTTTCGTCAGGAATATTTGGATACACTTTACCGCTATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGAGCTGCAGAGTATCTCTACTTTTTCCGCGTGCTTGTTCCCTCCACAGACAGGAATGCTCTGAGCTCTCTGTGGGGCAAACTGGCATCGGAAATCCTCATGCAGAATTGGGAAGCAGCCATGGAGGACCTGACCCGCTTACGAGAGACCATCGACAACAACTCGGTGAGTTCGCCTCTTCAGTCACTGCAGCAGAGGACGTGGCTCATACACTGGTCACTGTTTGTCTTCTTTAATCATCCCAAAGGCAGAGACAACATCATCGAGCTCTTCCTCTATCAGCCCCAGTACCTAAATGCAATTCAGACCATGTGCCCCCACATTCTCCGCTACCTGTCCACAGCTGTCATCACCAACAAGGATGTGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAGCATGTTGGCAGATAAGCTGAATATGACCCCTGAGGAGGCCGAGAGATGGATCGTAAACTTAATCCGCAATGCCAGACTGGATGCCAAAATCGACTCCAAACTGGGTCATGTGGTGATGGGCAACAACGCAGTGTCGCCGTATCAGCAGGTGATCGAGAAGACCAAGAGCCTGTCGTTCCGCAGTCAGATGTTGGCCATGAATATCGAGAAGAAGATCAGCCACAGCAACAGAAATGAGACACCGAACTGGGCGGCTCAAGACACGGGATTCTATTAAGACTGGAATCAAGTCAAACAGTGGATCATCTGTTATTCTCCTCGACTTCATCTTAGTATTTAACTAACTTTCTTTTATCTAGCCATGTTTTATAATAGGATCATTTTAAGAAAGACTGTTGCAGACATTTTCGGCACTGCGGAGCTGTGGATTTCTGAGAGCTTGCCATAGAGTTTTATGCATTCTGTATGAAGGAAAGGATTTACCAGGCAagattttattaactttttttcagTTCGGTGTGTTCTCGAATTCATTGTTTGAATATCATAACACCAGAATAAACAATGAGAATGTGCTTCTGAATGCATTTTCTAGGTCCTACAAAGTACTCATAGAATCATTTACGGTTGAAATGtgtaatttgtatgtcattatCATGTGTCACAATGCCATTCTgatggcaaggcaagtttatttatatagcacatttcatacaaagtggtaattcaaagtgctgtacataaacaagggtaaaagagacaagtgtaagaaaatgaaaacaaataataaaaataaaaattataaaaataagaataaaaaatagataaaacagataaaatgtgttaaaatatgttaTAAGATAATGATTAAAATATGTTATAAGATTATggtaacattatttttattatttatttatttatttatttatttatttatttatgccttGCACCACTTTTCCTGAATTGTCATTGCCAGTCTTAATCCAATtataatcgttttttttttttttttatttagtttggaaTTACCACAACCATTGCAGTTTTACATGTATACTGCAGTTGAAAAAACCCAATTCGTTGTTCATGAAGTGTAGAAACCCTTTCTGTCGTGTTTGGATTTCTATGCTGTATTTTAGCAATGGCGAACAGCCGATTTTATCCACTAGGTGGCAGCAGTGACTAACTTTTCAGTTTTTGTCTGGCTAGTCACCAATGGACTGTCGCAAACTAGTCATTACCAGCAGCCTCACTGCTCATCATCTTTTTAAAGGTTTCTTGATTTTGCGGTCTGTTTACAAATAGAGACGTAGGAATGTTGGGCATCTGTGTTTGATTTTGGACGAGGGGGAACAGGTAATTTTAGGCCAGAGGTTTGAAAACACAGGGTGTGTGTTGTCGAATAAGCAAACGAACATGGAAAGATCCTGTTGTGACTAATAAACGACCAGCCTCCTCTGAATAGCAGATTTTCCTTTAGTTATTTTTGTGTTTCATACAAAGTCTAGACAAAATGCTGGTAAAAAGGTGTTTTCTGGAAGCAGATCTGTTTGGCATATTCATCAAAATGCAGAGCTCTCATTATAATTTGGTTTTAAATATGATCAAAAACCTTAACTGCTATATTTAGTAGTGGGCAAAAGTCATGTCTTATGTATGAAATATATAGGCTCAAACAGATTATGCAAGTTTTTCGgagaatacataaaaaaattgtatgtGTTCCTCTTATAAGTGTTTAAAATTTGTGATAATGCAAAAGAACGTGGTTGAttctattataaaatattttttttattcttatcctttccataataataaattaaacccATATTCCTTGATAAACTATAGCAATTTGTTAtagatttaatcatttaaatatcttaaccttatgcaaaaacaaaaaaaaaaatgtaaataaaaaaaacacttgaaaaatGTCTTGGTTTTAGGATTTATAGTGATGTGTTTgagcaaaaccttttttttattctgaGAAACATTTCTTTGTCAATAtctgtaatatattttggtgtatttaaacaacatttatgccttaaaaagtcttaaattcattaaaaaaaaaaaaaaaaaatcttaaataatttGAAACAGGTCTAAAATTTCCTCTGTCCAGGTAAAGCTATCAAATCAGCCTGAGATCtgtccaatcaccaacaatccatctctaTATATTTCCtaagtttttttattgcaaagagaaaaTTCTTCTAATTAAATAAACTACACATAAactaaaaacagttaaaaacacaattactcatgataataacagagttAATGTTTATAAATAACCATAAAACTTTaggttttataacagaaacacattaggTTGAATCCATTTGGACCaaaaaccaacaaatattgtaaaTACTTTTGATTAAACATGTAATTTTCTCTGTAATATACACtgttaaacttgtcattaaaAATAGACGAAAcatttatgttgaaaaaaaaagtgtgtaaaacTAGTTTTCTTGTATTGACacattaaa
>TCONS_00029138
agttttttaaacGCTCTTCTTATTTTCAAAATGGCGGAGTACGATCTGACTACCAGAATCGCTCATTTTTTAGACAGGCATTTGGTCTTTCCGTTGCTGGAATTCCTTTCGGTCAAAGAGATCTACAATGAGAAAGAACTTCTCCAAGGGAAGCTGGATCTTCTCAGCGAAACAAACATGGTGGACTTTGCAATGGATGTATATAAGAACCTCTATCCTGACAAAGAAATTCCACACTCCTTGAGGGACAAAAGAACCACAGTGGTGGCCCAGCTAAAGCAGCTCCAGTCTGAAACGGAACCCATAGTGAAGATGTTTGAAGATCCAGAGACTCAGAGACAGATGCAGTCCACCAGAGATGGAAGGATGCTGTTTGAATATTTAGCAGACAAACATAGTTTTCGTCAGGAATATTTGGATACACTTTACCGCTATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGAGCTGCAGAGTATCTCTACTTTTTCCGCGTGCTTGTTCCCTCCACAGACAGGAATGCTCTGAGCTCTCTGTGGGGCAAACTGGCATCGGAAATCCTCATGCAGAATTGGGAAGCAGCCATGGAGGACCTGACCCGCTTACGAGAGACCATCGACAACAACTCACTGCAGCAGAGGACGTGGCTCATACACTGGTCACTGTTTGTCTTCTTTAATCATCCCAAAGGCAGAGACAACATCATCGAGCTCTTCCTCTATCAGCCCCAGTACCTAAATGCAATTCAGACCATGTGCCCCCACATTCTCCGCTACCTGTCCACAGCTGTCATCACCAACAAGGATGTGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAGCATGTTGGCAGATAAGCTGAATATGACCCCTGAGGAGGCCGAGAGATGGATCGTAAACTTAATCCGCAATGCCAGACTGGATGCCAAAATCGACTCCAAACTGGGTCATGTGGTGATGGGCAACAACGCAGTGTCGCCGTATCAGCAGGTGATCGAGAAGACCAAGAGCCTGTCGTTCCGCAGTCAGATGTTGGCCATGAATATCGAGAAGAAGATCAGCCACAGCAACAGAAATGAGACACCGAACTGGGCGGCTCAAGACACGGGATTCTATTAAGACTGGAATCAAGTCAAACAGTGGATCATCTGTTATTCTCCTCGACTTCATCTTAGTATTTAACTAACTTTCTTTTATCTAGCCATGTTTTATAATAGGATCATTTTAAGAAAGACTGTTGCAGACATTTTCGGCACTGCGGAGCTGTGGATTTCTGAGAGCTTGCCATAGAGTTTTATGCATTCTGTATGAAGGAAAGGATTTACCAGGCAagattttattaactttttttcagTTCGGTGTGTTCTCGAATTCATTGTTTGAATATCATAACACCAGAATAAACAATGAGAATGTGCTTCTGAATGCATTTTCTAGGTCCTACAAAG
>TCONS_00029139
ATTTTCAAAATGGCGGAGTACGATCTGACTACCAGAATCGCTCATTTTTTAGACAGGCATTTGGTCTTTCCGTTGCTGGAATTCCTTTCGGTCAAAGAGATCTACAATGAGAAAGAACTTCTCCAAGGGAAGCTGGATCTTCTCAGCGAAACAAACATGGTGGACTTTGCAATGGATGTATATAAGAACCTCTATCCTGACAAAGAAATTCCACACTCCTTGAGGGACAAAAGAACCACAGTGGTGGCCCAGCTAAAGCAGCTCCAGTCTGAAACGGAACCCATAGTGAAGATGTTTGAAGATCCAGAGACTCAGAGACAGATGCAGTCCACCAGAGATGGAAGGATGCTGTTTGAATATTTAGCAGACAAACATAGTTTTCGTCAGGAATATTTGGATACACTTTACCGCTATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGAGCTGCAGAGTATCTCTACTTTTTCCGCGTGCTTGTTCCCTCCACAGACAGGAATGCTCTGAGCTCTCTGTGGGGCAAACTGGCATCGGAAATCCTCATGCAGAATTGGGAAGCAGCCATGGAGGACCTGACCCGCTTACGAGAGACCATCGACAACAACTCACTGCAGCAGAGGACGTGGCTCATACACTGGTCACTGTTTGTCTTCTTTAATCATCCCAAAGGCAGAGACAACATCATCGAGCTCTTCCTCTATCAGCCCCAGTACCTAAATGCAATTCAGACCATGTGCCCCCACATTCTCCGCTACCTGTCCACAGCTGTCATCACCAACAAGGATGTGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAGCATGTTGGCAGATAAGCTGAATATGACCCCTGAGGAGGCCGAGAGATGGATCGTAAACTTAATCCGCAATGCCAGACTGGATGCCAAAATCGACTCCAAACTGCAAGAAAACTGGTCGGTCCTGCAGCTCCCACGGTACAGCCGCagaaatgcagacctctaatGTGCAGATCATTTTGCATCATCTCTACTACACTCTTCTTCAATGTTCATATGGCTAGGAATGTTGTTCTCCTGTCTGACCACTGTGGAATAAGAAACCAATTGGGGTGAAGATATAGCACATAGAAGGCAGAGTTCCAGAACACACCCACTGACTGTATAATCACCACAGGCCAATGGGTCATGTGGTGATGGGCAACAACGCAGTGTCGCCGTATCAGCAGGTGATCGAGAAGACCAAGAGCCTGTCGTTCCGCAGTCAGATGTTGGCCATGAATATCGAGAAGAAGATCAGCCACAGCAACAGAAATGAGACACCGAACTGGGCGGCTCAAGACACGGGATTCTATTAAGACTGGAATCAAGTCAAACAGTGGATCATCTGTTATTCTCCTCGACTTCATCTTAGTATTTAACTAACTTTCTTTTATCTAGCCATGTTTTATAATAGGATCATTTTAAGAAAGACTGTTGCAGACATTTTCGGCACTGCGGAGCTGTGGATTTCTGAGAGCTTGCCATAGAGTTTTATGCATTCTGTATGAAGGAAAGGATTTACCAGGCAagattttattaactttttttcagTTCGGTGTGTTCTCGAATTCATTGTTTGAATATCATAACACCAGAATAAACAATGAGAATGTGCTTCTGAATGCATTTTCTAGGTCCTACAAA
>TCONS_00029140
TGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAGGGTCATGTGGTGATGGGCAACAACGCAGTGTCGCCGTATCAGCAGGTGATCGAGAAGACCAAGAGCCTGTCGTTCCGCAGTCAGATGTTGGCCATGAATATCGAGAAGAAGATCAGCCACAGCAACAGAAATGAGACACCGAACTGGGCGGCTCAAGACACGGGATTCTATTAAGACTGGAATCAAGTCAAACAGTGGATCATCTGTTATTCTCCTCGACTTCATCTTAGTATTTAACTAACTTTCTTTTATCTAGCCATGTTTTATAATAGGATCATTTTAAGAAAGACTGTTGCAGACATTTTCGGCACTGCGGAGCTGTGGATTTCTGAGAGCTTGCCATAGAGTTTTATGCATTCTGTATGAAGGAAAGGATTTACCAGGCAagattttattaactttttttcagTTCGGTGTGTTCTCGAATTCATTGTT
>TCONS_00029141
GAGACTCAGAGACAGATGCAGTCCACCAGAGATGGAAGGATGCTGTTTGAATATTTAGCAGACAAACATAGTTTTCGTCAGGAATATTTGGATACACTTTACCGCTATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGAGCTGCAGAGTATCTCTACTTTTTCCGCGTGCTTACAGGAATGCTCTGAGCTCTCTGTGGGGCAAACTGGCATCGGAAATCCTCATGCAGAATTGGGAAGCAGCCATGGAGGACCTGACCCGCTTACGAGAGACCATCGACAACAACTCGGTGAGTTCGCCTCTTCAGTCACTGCAGCAGAGGACGTGGCTCATACACTGGTCACTGTTTGTCTTCTTTAATCATCCCAAAGGCAGAGACAACATCATCGAGCTCTTCCTCTATCAGCCCCAGTACCTAAATGCAATTCAGACCATGTGCCCCCACATTCTCCGCTACCTGTCCACAGCTGTCATCACCAACAAGGATGTGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAG

Function

symbol description
eif3eb Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-283 Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).

Ensembl:

ensembl_id ENSDARG00000002549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029137 False 3883 mRNA 0.37 13 22622355 22664398
TCONS_00029138 False 1679 mRNA 0.45 13 22624268 22664128
TCONS_00029139 False 1895 nonsense_mediated_decay 0.45 15 22624269 22664107
TCONS_00029140 False 697 nonsense_mediated_decay 0.44 5 22624336 22648963
TCONS_00029141 True 754 nonsense_mediated_decay 0.48 8 22638164 22658350

Neighbor

gene id symbol gene type direction distance location
XLOC_014738 pleca coding downstream 364 22407819 ~ 22621991 (-)
XLOC_014737 eppk1 coding downstream 235214 22360956 ~ 22387141 (-)
XLOC_014736 slc52a2 coding downstream 275752 22333321 ~ 22346603 (-)
XLOC_014735 si:ch73-196l6.5 coding downstream 294201 22318000 ~ 22328154 (-)
XLOC_014734 NA coding downstream 560301 22059711 ~ 22062054 (-)
XLOC_014741 nudcd1 coding upstream 94718 22759116 ~ 22843480 (-)
XLOC_014742 NA coding upstream 301388 22965786 ~ 22969561 (-)
XLOC_014743 BX571825.10 coding upstream 378088 23042486 ~ 23042956 (-)
XLOC_014744 BX571825.3 coding upstream 382402 23046800 ~ 23047282 (-)
XLOC_014745 BX571825.8 coding upstream 383519 23047917 ~ 23048219 (-)
XLOC_014711 CR382300.3 misc downstream 2893600 19728690 ~ 19728755 (-)
XLOC_014733 NA non-coding downstream 582853 22034197 ~ 22039502 (-)
XLOC_014730 NA non-coding downstream 1255023 21358578 ~ 21367332 (-)
XLOC_014729 BX470117.1 non-coding downstream 1434317 21176257 ~ 21188038 (-)
XLOC_014728 BX511212.1 non-coding downstream 1505812 21116411 ~ 21116543 (-)
XLOC_014746 BX571825.11 non-coding upstream 386379 23050777 ~ 23051016 (-)

Expression


Co-expression Network