XLOC_014758


Basic Information

Item Value
gene id XLOC_014758
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23410015 ~ 23411861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030222
taattaaaaatgaaaatggtaTAATATATCTTATTTATAATATGTTACATATATCTTACGGTAAATCAAGCCAGATCTAATCAGTTAAGAAAAATCGGCGCAGTTCCATACTCCACACGATAGATGGCGGTGTTGGTGAAATGGATCAACAAATCAAGAGGAAGAAGCTGTTGTGGTTTGAAATTTGTACCCTGTAAGGTAAGTGTAATCTGCTTTAATATCATGTTGttttgctatgttttttttttatatgtgcaagttttaatttagtattacACTAATATCAATGCACAGACACTCTTTATTCCAAAAATCTTAGACAAACATTAAAACGGTGTGAGGGAGTGTTACTTTACTTTTCTTTTAAACATctcaaaattaaacatttattaagcaAAATTCGGTGATTAAGTGCTTTTATTGTGTACATTGCGAGTCGTCTTCATTAAATTGCCCTATAAAGTCAATGAAAAAGTATGTTAAGTCATGAGATGAAACTTCTGCAGTTTTAGCTTTTAAATCATGTTTGCTTTGATTTCATATCAAGAGACTTTTAAACACAAACACCAAGTTAATTCTGTTTTTATAGAATCAATTCaagtttatgtgtttttttactgatttgtattttgtaaataaactttactATGTTAtggaaaatgtattgttttagtaATGAGTAATTGTATTTTGACTTGTCTCTGTAAAATCTAGTATTACAGTAGGCTGAGCtgacttatttttattatcattgtttgttattattacaatGCTTCTCtaatatttgtaactatttgtTTTTCTCCACAGATATttgagtgtgtctgtgtataatGAGCAGTCTAGCAGGTATGAGTTGCTGGAAATGTTTTAGATTAAAACATTTACACTATGACCACATTTGCTGGTTTCCCTGTCCATATGCAGATTGCTCATGTACTTTCACAAGCTGGATGAAGCTTTCGAGTCACATCAAACACACAGAATGAATATTAAACAATATGTATATGCATTATCCATATAACTGCGGTTGACATAAAGAAACATTGAATATAACACACTCATgctaaaatagttaaaataagtgaataaataattgaatttaaatgtgtaaataagtaATAAGCTTTAAGCTGTAAACCATTTTATGTTAATAGCTgttatttttttctagttttaaTACGTAACCAAGCATGATTGTGTACTGAAGACCTGCCTCATTTGAAGAGTGTGCATCTGAAGACTTGTAAAAGAATATGTGGACTAAAAGTGCAGTTGCTGAATCTCAAAATGCACACACAGCAGTGGAGATCTATATCGTTTGGGCTGAGGATGCTGGTCCTGGGGACAGACCTACAGATGTTGGTGTAGAAATTTGCAGAACCTGTGTATCATATGGATTGGATGGACTTTTTGGGTTCATGTACACTTAAAGGATTTTTTAAccagaaataaaaatgtttaattattcatGTCGTACCAAACATTGATTTGTCATTGAAGTACAAATTAAGATACTTcaggtgaaatctgagagctctctcattctctatagacagcaatggtGCCAACTTGTTTAAAGTCTAGATAAATACctaaaacatcctcaaaacagaatTCAGAATTCAATCAGAATATTTTTAAGCTACAAGAATAATTCTGAGTGCatataaagcaaaaataacagcctttgagtttcttctgtggaacacaagatgttttgaagaaagctgaatacctgt

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043034 costamere cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030222 True 1742 lncRNA 0.31 2 23410015 23411861

Neighbor

gene id symbol gene type direction distance location
XLOC_014757 pimr81 coding downstream 27396 23381331 ~ 23382619 (-)
XLOC_014756 pimr90 coding downstream 40733 23368001 ~ 23369282 (-)
XLOC_014755 NA coding downstream 104295 23305162 ~ 23305720 (-)
XLOC_014754 NA coding downstream 121895 23285194 ~ 23288120 (-)
XLOC_014752 grb10a coding downstream 160193 23136170 ~ 23249822 (-)
XLOC_014759 pimr77 coding upstream 6217 23418078 ~ 23419342 (-)
XLOC_014760 NA coding upstream 24097 23435958 ~ 23437400 (-)
XLOC_014761 pimr82 coding upstream 38632 23450493 ~ 23452345 (-)
XLOC_014762 pimr80 coding upstream 56910 23468771 ~ 23470709 (-)
XLOC_014763 pimr76 coding upstream 76380 23488241 ~ 23489527 (-)
XLOC_014711 CR382300.3 misc downstream 3681260 19728690 ~ 19728755 (-)
XLOC_014753 BX914202.1 non-coding downstream 190420 23219477 ~ 23219595 (-)
XLOC_014751 BX571825.12 non-coding downstream 280714 23128663 ~ 23129301 (-)
XLOC_014750 BX571825.2 non-coding downstream 289088 23120398 ~ 23120927 (-)
XLOC_014768 NA non-coding upstream 213252 23625113 ~ 23627929 (-)
XLOC_014772 NA non-coding upstream 308408 23720269 ~ 23726829 (-)
XLOC_014773 NA non-coding upstream 321426 23733287 ~ 23734065 (-)
XLOC_014777 NA non-coding upstream 445251 23857112 ~ 23857592 (-)

Expression


Co-expression Network