XLOC_014776 (pimr88)


Basic Information

Item Value
gene id XLOC_014776
gene name pimr88
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23794835 ~ 23799729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029173
GTGTTCCCAGTGAATTCTGTTATTATGGCATTGAAAAGAAAGCGTTGTTCTCAAGGAACTCAGGTGTATGATTTCCATACTCGTACACCTCCAACATCCAGCACCAATGTGGCTGAGAACCATTCACCCGTTGGTGTTGGTGAGGAGATTGAGATACAAGTGAGAAAGAAGAGGAGGTGGGAGAGTTTTAAAAAGCCGCTCTCCCTTTACGCTGAGGATGACAACCAATGGATGACTTTTCTCTGTGGCCAAAAGAGAAAACGAAGTTGTCACAGCGATCATGTGAACGATTTCCATCCTTGTACACCTCCGATATCAATCACCAGCCTTCAGTCCACTGATGTTGCTGAGGAAAATgagagaaagaggagaaggaCTGACAGTCCTGAAAAGCTGCTCTCCTGTAAAGTCCAGAAGTCCAGCAGCAGCTCTAGTCAGGAGGACCAGACTCCTGATCAGATCCACAAGAAGAGTTCTGAAGGTGACATTCTGGACCAGTATGAACTCGGCAAGGAGATTGGAGAGGGAGGATTTGGCAGCGTCTATGAAGGGAAGCGCTTGGAGGATGGCCTtgagGTGGCAGTAAAAATTGCCAGAAAGCCACCGAACATGAAATACATCAACATCGCTGGTCATCCTGAGCCCCTTCCTTTAGAGATCGGCCTGTTGATACTGGCTCATAGAGGCGGCAAGGTTCCAGAGATCATTGAGCTGCTGGACTGGCAGGACCAGCAGGATTGTTACATCATGATCCTGGAACGACCTTCACCATGTGTAGATCTGTTCGACTTCATAATGTCTCTCGGCTCCATCACTGAACGCCAGGCTCAAAAGATCATGGAGCAGGCAACAACGGCCGGTCTCATGTGCTGCAGACGTGGGGTATTTCACCGAGACATAAAGCTGGAGAACCTGCTGGTCAACACTGACACGCTTGAGGTCAAGCTAATTGACTTTGGCTGTGGAGCTCTTCTCCAGGAATCTGGCTATGACAGTTTCTGTGGCACAAAGGAGTACTTCCCACCGGAGTACTACCTGGACGACGAATACCATGCAGAACCATCCACTGTATGGTCTTTAGGAGTTCTGTTATTCCTGCTGCTGTGTCAAAGATTTCCTGAAGTCACAGACACGCAGAGGATCGATGATGGAAACTGGACTGAGCCTGGATTGTCAGAAGAATGCTGTGATTTGATTCAAGCTCTCCTGCAGGAAAACCCAAGCCAGCGGATTCCTCTGGAAGAAATCATTCTCCATCAATGGTTTAAGGTCAAGGAATAAGCAATAAGGAATGTAGTGCAAATGGATGGGAAAG
>TCONS_00029174
GTTTGAGGAGGTTATCAAGCCATCCATTGAAAGACGGAGAGGAAAAGACAaaagtctctgcacgggcctgcccTGAGATGACAACCAATGGATGACTTTTCTCTGTGGCCAAAAGAGAAAACGAAGTTGTCACAGCGATCATGTGAACGATTTCCATCCTTGTACACCTCCGATATCAATCACCAGCCTTCAGTCCACTGATGTTGCTGAGGAAAATgagagaaagaggagaaggaCTGACAGTCCTGAAAAGCTGCTCTCCTGTAAAGTCCAGAAGTCCAGCAGCAGCTCTAGTCAGGAGGACCAGACTCCTGATCAGATCCACAAGAAGAGTTCTGAAGGTGACATTCTGGACCAGTATGAACTCGGCAAGGAG

Function

symbol description
pimr88 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-487 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000094339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029173 False 1315 mRNA 0.48 8 23794835 23797664
TCONS_00029174 True 376 mRNA 0.48 3 23796274 23799729

Neighbor

gene id symbol gene type direction distance location
XLOC_014775 pimr87 coding downstream 25634 23767577 ~ 23769201 (-)
XLOC_014774 pimr89 coding downstream 47158 23745832 ~ 23747677 (-)
XLOC_014773 NA coding downstream 60770 23733287 ~ 23734065 (-)
XLOC_014772 NA coding downstream 68006 23720269 ~ 23726829 (-)
XLOC_014771 pimr86 coding downstream 85284 23708263 ~ 23709551 (-)
XLOC_014777 NA coding upstream 57383 23857112 ~ 23857592 (-)
XLOC_014778 pimr92 coding upstream 70932 23870661 ~ 23871941 (-)
XLOC_014779 si:dkey-222b8.4 coding upstream 75653 23875382 ~ 23895839 (-)
XLOC_014780 chtopa coding upstream 97937 23897666 ~ 23918136 (-)
XLOC_014781 NA coding upstream 194305 23994034 ~ 24063227 (-)
XLOC_014711 CR382300.3 misc downstream 4066080 19728690 ~ 19728755 (-)
XLOC_014768 NA non-coding downstream 166906 23625113 ~ 23627929 (-)
XLOC_014760 NA non-coding downstream 357435 23435958 ~ 23437400 (-)
XLOC_014758 NA non-coding downstream 382974 23410015 ~ 23411861 (-)
XLOC_014784 BX547993.4 non-coding upstream 340051 24139780 ~ 24139894 (-)
XLOC_014785 NA non-coding upstream 341586 24141315 ~ 24145677 (-)
XLOC_014787 BX547993.2 non-coding upstream 383046 24182775 ~ 24182891 (-)

Expression


Co-expression Network