XLOC_014789 (prf1.7)


Basic Information

Item Value
gene id XLOC_014789
gene name prf1.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24196088 ~ 24198184 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029190
AGAATCACTTTGTTCAGACCACCTGTGAATTCAGTGATCATGAGGCACGTACCGGTTTACCTGTTAGTTTTCTGGGCTATGCTTCTCATTGCCATTTCTGGAGAAGTTGAAATAGGCACTTTAAAAGAGTGTGAAAATGCTCACTTTGTTCCAGGATACAATCTTGCTGGTGAAGGATTTGATGTTGTGACCCTGGAGCGCAAAGGTACTTACGTGATCAACACAGAGAAATGGGATTTAGGAAACGGCACCTGTAACATGCGCACAAACCAATACATGAATGGAATCAAGCAGAAGCTACCAGCTGCAGTTGACTTCTGGAGGACCTTGCCAAAGTGTTCAATGAAAGTCTCCGGTCAGATCTTTGAATCAAGTGAAGCAGTGGTCGAAGAATCGTCTTCAGCTATCTCAGGCGACTGGAAAGCAGATTTAAGTGTTAAACTTTCTGGAGCTACAGTTGGAGGCACTCATTCCAGGGAAGCAAAATTTGCAATGCAGAAATCCAAACGAGACAAATACAGTTTCACCAAACACCAAGTCGAATGTAACTTTTACAGATATCACGTTGTTCAAAAGCCTCCTCTTCATGCTGAGTTTCTTCAAGCAATCAAATTACTCCCTGCATCTTATGATAAATTTGCCTACCGCAGTCTGATCTCCACATACGGCACTCACTATACCACAAGTGTAATGTTAGGGGGACACATGAAAGCCATAACAGCCATAAAAACCTGTGAGGCTTCAATTGGTGGACTTTCAGACACTGCAATCAAAGACTGTTTGGATGTCGAAGCCTCGGGCATATATAAAGCATTAACTGTGGAGGCAGAGGCACGTTTATGTCGAGAACTTAAACAGAAGTTGGGCACAAATCTTAAGATGAGCAGCAAGTTTAGTGAGCGTCAGACAGAGATAATTGGAGGAAAGATAAACGGAGAAGATCTACTTTTTTCTGGTTCATCACACAAAAATGCCCTTAAAGGCTGGCTTGAGTCTTTGAAGAGCGTCCCTGATGTTGTGCAGTATACTCTGAAACCCCTCCATTTCTTACTGAGCGATAAACACCCTGCCAGAAAAGGGCTAAAGAAAGCTGTTGAAGAATACATCATTGAAAATGCCCTCAGGAAGGTTTGCTCTGAGCCTTGTAAGCTTGGTAAGAAGAGCAGTGCAAGAGatccttgtgtttgtgtttgtgaaagTAGCCGAATTATGAAGACTAACTGCTGTCCAACTGAAAAAGGGCTCGCCACCCTGAAGGTCTACAATCTCAGAGCCAACGGTCTGTATGGAGATACATGGACTCAAACAGATGGTTATGTAGAAGTCAGACATCAAGGACAAAACAAACGCACTCAGATTATTGATGATAATGACAATCCACGTTGGTCAGAATCATTTAATTTTGGTCATATTAATATCAAAATCGGCAGTACATTAACTTTTGAAGTATATGACGACGATGACGGCTGGAATTGTGATCATCTTGGTACATGTTCTGTTAAAGTTAGCAGTGGAGTTGTTAATGATGGATGTGCTTTAAATCATGGCACCTTATTTTTCAGCTATGAGGTGAAATGTGCACCCAGTCTACAGGGCCCACAGTGTGATGAACACAAGCCGTCGCCAATGGCTGCCTCTCTGGCTGACATTTTCAGCTCAAGAAACGGTGTTCTGGTCAAAGACATGCAGAGGCTTGAATTAGCTTTCAATAACTCAGGTATGACTCACTTTAAGGGTGATAATGGAAAGCTCATGATGCTGTAACTCTCAAATATATTTTCATGCTTGACAAAGATGGATAAGATGGACTATTAGACTTTCAAGCCTTAGAAAAAGGAAAACTTTTGCTTAATACTTTTCCATTGCTTTTTTTGCATTAATAAAGCATTCCAAAAGAC
>TCONS_00029191
TACAAAACTGTGATATAAAATGAACTGAGAGCGTGAGAATATTTCAGAATCACTTTGTTCAGACCACCTGTGAATTCAGTGGTAagaatctaaaaatatatatattaggtttTTAAGTTATGCTAGAAACGTTCATATTTCCTTTTCTCTCAACAGATCATGAGGCACGTACCGGTTTACCTGTTAGTTTTCTGGGCTATGCTTCTCATTGCCATTTCTGGAGAAGTTGAAATAGGCACTTTAAAAGAGTGTGAAAATGCTCACTTTGTTCCAGGATACAATCTTGCTGGTGAAGGATTTGATGTTGTGACCCTGGAGCGCAAAGGTACTTACGTGATCAACACAGAGAAATGGGATTTAGGAAACGGCACCTGTAACATGCGCACAAACCAATACATGAATGGAATCAAGCAGAAGCTACCAGCTGCAGTTGACTTCTGGAGGACCTTGCCAAAGTGTTCAATGAAAGTCTCCGGTCAGATCTTTGAATCAAGTGAAGCAGTGGTCGAAGAATCGTCTTCAGCTATCTCAGGCGACTGGAAAGCAGATTTAAGTGTTAAACTTTCTGGAGCTACAGTTGGAGGCACTCATTCCAGGGAAGCAAAATTTGCAATGCAGAAATCCAAACGAGACAAATACAGTTTCACCAAACACCAAGTCGAATGTAACTTTTACAGATATCACGTTGTTCAAAAGCCTCCTCTTCATGCTGAGTTTCTTCAAGCAATCAAATTACTCCCTGCATCTTATGATAAATTTGCCTACCGCAGTCTGATCTCCACATACGGCACTCACTATACCACAAGTGTAATGTTAGGGGGACACATGAAAGCCATAACAGCCATAAAAACCTGTGAGGCTTCAATTGGTGGACTTTCAGACACTGCAATCAAAGACTGTTTGGATGTCGAAGCCTCGGGCATATATAAAGCATTAACTGTGGAGGCAGAGGCACGTTTATGTCGAGAACTTAAACAGAAGTTGGGCACAAATCTTAAGATGAGCAGCAAGTTTAGTGAGCGTCAGACAGAGATAATTGGAGGAAAGATAAACGGAGAAGATCTACTTTTTTCTGGTTCATCACACAAAAATGCCCTTAAAGGCTGGCTTGAGTCTTTGAAGAGCGTCCCTGATGTTGTGCAGTATACTCTGAAACCCCTCCATTTCTTACTGAGCGATAAACACCCTGCCAGAAAAGGGCTAAAGAAAGCTGTTGAAGAATACATCATTGAAAATGCCCTCAGGAAGGTTTGCTCTGAGCCTTGTAAGCTTGGTAAGAAGAGCAGTGCAAGAGatccttgtgtttgtgtttgtgaaagTAGCCGAATTATGAAGACTAACTGCTGTCCAACTGAAAAAGGGCTCGCCACCCTGAAGGTCTACAATCTCAGAGCCAACGGTCTGTATGGAGATACATGGACTCAAACAGATGGTTATGTAGAAGTCAGACATCAAGGACAAAACAAACGCACTCAGATTATTGATGATAATGACAATCCACGTTGGTCAGAATCATTTAATTTTGGTCATATTAATATCAAAATCGGCAGTACATTAACTTTTGAAGTATATGACGACGATGACGGCTGGAATTGTGATCATCTTGGTACATGTTCTGTTAAAGTTAGCAGTGGAGTTGTTAATGATGGATGTGCTTTAAATCATGGCACCTTATTTTTCAGCTATGAGGTGAAATGTGCACCCAGTCTACAGGGCCCACAGTGTGATGAACACAAGCCGTCGCCAATGGCTGCCTCTCTGGCTGACATTTTCAGCTCAAGAAACGGTGTTCTGGTCAAAGACATGCAGAGGCTTGAATTAGCTTTCAATAACTCAGGTATGACTCACTTTAAGGGTGATAATGGAAAGCTCATGATGCTGTAACTCTCAAATATATTTTCATGCTTGACAAAGATGGATAAGATGGACTATTAGACTTTCAAGCCTTAGAAAAAGGAAAACTTTTGCTTAATACTTTTCCATTGCTTTTTTTGCATTAATAAAGCATTCCAAAAGAC

Function

symbol description
prf1.7 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis and immune response. Predicted to be part of membrane attack complex. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019835 cytolysis biological_process
GO:0005579 membrane attack complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111212-11 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis and immune response. Predicted to be part of membrane attack complex. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

Ensembl:

ensembl_id ENSDARG00000110781

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029190 False 1898 mRNA 0.42 3 24196088 24198139
TCONS_00029191 True 2018 mRNA 0.41 2 24196088 24198184

Neighbor

gene id symbol gene type direction distance location
XLOC_014788 BX547993.1 coding downstream 7345 24187594 ~ 24188743 (-)
XLOC_014787 BX547993.2 coding downstream 13197 24182775 ~ 24182891 (-)
XLOC_014786 prf1.2 coding downstream 32243 24161712 ~ 24163845 (-)
XLOC_014785 NA coding downstream 50411 24141315 ~ 24145677 (-)
XLOC_014784 BX547993.4 coding downstream 56194 24139780 ~ 24139894 (-)
XLOC_014790 BX547993.3 coding upstream 16041 24214225 ~ 24218942 (-)
XLOC_014791 prf1.7 coding upstream 23684 24221868 ~ 24224292 (-)
XLOC_014792 s100v2 coding upstream 64079 24262263 ~ 24267823 (-)
XLOC_014793 NA coding upstream 189881 24388065 ~ 24393032 (-)
XLOC_014794 thbs3b coding upstream 221509 24419693 ~ 24443867 (-)
XLOC_014711 CR382300.3 misc downstream 4467333 19728690 ~ 19728755 (-)
XLOC_014781 NA non-coding downstream 132861 23994034 ~ 24063227 (-)
XLOC_014798 NA non-coding upstream 488526 24686710 ~ 24688179 (-)
XLOC_014800 BX927310.2 non-coding upstream 558659 24756843 ~ 24756974 (-)
XLOC_014804 CU915256.1 non-coding upstream 858628 25056812 ~ 25060877 (-)
XLOC_014806 CU915256.2 non-coding upstream 886081 25084265 ~ 25086092 (-)

Expression


Co-expression Network