XLOC_014794 (thbs3b)


Basic Information

Item Value
gene id XLOC_014794
gene name thbs3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24419693 ~ 24443867 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029197
ATGGAGCTGAGGAAAATTGTGCCAAACCTGCTTGTTCTGTATGTTGCTGTCCACTTTTCTCAATCGTCCGAAATTAAAGTAATCAATGTGCTGGAGCTTCATGATGTCCGTCAGACAGCAGCAGCTATAGAGAATCTGTCTGGAGCTCTGCAGACGGTTGGAGATCTGTACATCACCTCCACCTTCATGCTGCCACCCAAACTCGGAGGCGTTTTATTTGGTCTCTATGATAAGCAGGACAACAAGAAATACCTAGAGATTGCTGTTGTAGGCAAGATCAACAAATTACTGGTGCGATACTTGCGTTCTGATGGCAAAGCTCATACTGTCAATTTACAAAACCCTGCTCTCGCAGAGGGACGCACACAGTCACTTATACTCAGAATTGGTGGACTTAGACGGAGTCACATAAACCTTGAGCTTTATGTGAACTGCCGTTTAGTCGACTCTGCTCAGGGATTGCCTTCATTCGTCGGACTTCCATCAGAGGCGGAATCTGTGGATGTTCGCACCGGACAGAAGTCTTATGCCAGGATACAGGGTTTAGTAGAATCTGTTAAACTGGCTCTCGGAGGCTCTTTGGCTACTGCTGGTCTCCTCATTGACTGTCCGTTTCAAGGAGATTCAGCAATAAACAATGCAGTGGTCAGTGACATTAATGCCATCCTTGGTGATCACACCAAAGCTCTGATTGGACAGCTGATCATCTTTAACCAGATCATGGGAGAGCTGAGAGAGGATATCAGAGAACAGactAAAGAGATGTCTCTAATCAGGAACACTATTCTTGAATGTCAAGTGTGTGGATTTCATGAGCCCCAGTCCCGGTGTCTTCCTAACCCATGCTATACCGGTGTAAGCTGCATGGAGAGCATGATGTACCCAGGATATCAGTGTGGCCCCTGTCCAGAGGAGTTGTGTGTGAACACAGCTAAAGGTTTCTCCTGTCAGTCCTGTCCTATAGGATTCACCGGTCCAACACTCAAAGGGGTTGgtttggaatttgccaaaagacaCAAACAgCATTGTGTTGATATTGATGAGTGTGCTGAGCTCTCCGGTTCCTGTGTGCCAAACTCAGTCTGCATAAACACAGTGGGATCGTTCAAGTGTGGCCAGTGCAAAGCAGGATTTGTGGGAAATCAGACTGTAGGCTGTTTTGCAAGGAGAACATGTGAAACTCTTGGCTATAGCCCCTGTGATGTCAACTCACACTGTGTGATGGGACGCAATAGTGACGTGTCCTGTGTGTGTAATGTTGGCTGGGCAGGTAATGGGAACATCTGTGGTCCAGACTCAGACATTGATGGTTACCCTGATGAACCTCTTCCATGTATGGACAATGACAAACACTGCAGAGcgGATAATTGTGCAAACACTCCAAACTCTGGGCAGGAGGATACAGATGGAGATGGCATTGGTGATCAGTGTGACGAGGATGCAGATGGAGATGGAATTAAAAACGTTGAGGACAACTGTCGTCTGGTGCCCAACAAGGACCAGCAGAACTCTGACACAGACTCCTATGGTGATGCTTGCGACAACTGCCCCAACGTACCCAACGGCGATCAGCTTGATACTGATGGCAATGGCAAGGGAGACATCTGTGACACTGATATTGATGGAGATGGGATCCCTAACGTTTTGGATAACTGTCCTAAAATACCCAACCCCATGCAGACAGACCGAGATGGAGATGGTGTGGGGGATGCATGTGACAGCTGTCCTGAGGTCAACGACCCACTGCAGTCAGACATGGACAATGATCTGGTGGGAGATGTATGTGATACAAACAAGGACATTGATGGTGATGGATATCAGGACACCAGGGATAACTGTCCTGAAGTGCCCAACAGTTCTCAGCTGGACTCTGATAATGACGGCATCGGGGACGAAtgtgacgatgatgatgataatgatggcATCCCGGATATTCTCCCTCCAGGCCCAGATAACTGCAGACTCGTTCCCAACCCCAGTCAAATAGACACTGATGCCAATGGAGTTGGTGACGTGTGTGAAACTGACTTCGACAATGATAAAGTGACTGACCTGTTAGATGCGTGTCCTGAAAGCGCAGAGGTCACTATGACAGATTTCAGAGCTTTCCAGACAGTCATTCTTGACCCAGAAGGTGATGCTCAGATTGACCCCAACTGGGTGGTACTGAATCAGGGAATGGAGATTGTGCAGACTATGAACAGTGACCCTGGTTTGGCTGTGGgctacacagcATTTAATGGTGTTGATTTTGAGGGCACGATCCATGtgaacacagccactgatgatgATTACGTGGGCTTCATCTTTGGCTATCAGGACTCATCCAGCTTCTATGTGGTGATGTGGAAACAGACAGAACAGACGTACTGGCAGAATTTACCATTCAAAGCCTTGGCTCAGCCTGGAATACAGCTGAAGGCAGTGAAGTCTCGTACGGGTCCGGGTGAGTATCTACGTAATGCCCTGTGGCACACAGGAGACACAACAGGGGAAGTTACTTTGCTCTGGAAGGACCCCAGAAATGTTGGCTGGAAGGACAGAGCATCCTATCGCTGGCACCTCTCTCACCGTCCACAGGTGGGATACATAAGATTAAGACTATATGAAGGTACAGCGCTGGTGGCAGATTCAGGAGTTGTGATTGACTCCACTATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTCTCTCAGGAAAATGTCATATGGTCCAATCTTGGCTATAGATGCAATGATTCTATACCAGATGACTTTATGCTGTACCACAAGCAGATGAAACTGAGGACATAA
>TCONS_00029199
AATACATTTCCTAAACCCAAGCTCAGATCTATATTTAGTTGTCGGAAACCAAAACTTTGACAGATATTTTCTTTTGCACGGTGAAATTCAATAGTCAGACAGGAGCTCAGCGCGGTAAACTGAAGACGCAGCGGGAGAGACCCGCAATAAATAGTTGTAGGTTGATTGACAAGCCTCGTTATCTCTCCCCCTGCCGTCGCCTGCAGCTCAACTTCTGTTTCTCATTTGGGAAAGAAAGTGTTGCGCTGCAGAGTCTCGGTGGACCCGCAGACTCTCACCCGCGCAGACTCTTTGAACCCCGGGCCGCTTAGGTCACAGAGACGCCGAGAAAGCGGTCAGAGGGTGAACGTAATGTTATGAAGATCGCCGATGCGTCGAGCTGTTCTTGTGTTTTACGACGGACAAAGAGGAACTTAACTGGATTACATTCGCTTTATTAAACAGTAGGCTTTTGTTGGACTTGGTTCAAGAGGATGGAGCTGAGGAAAATTGTGCCAAACCTGCTTGTTCTGTATGTTGCTGTCCACTTTTCTCAATCGTCCGAAATTAAAGTAATCAATGTGCTGGAGCTTCATGATGTCCGTCAGACAGCAGCAGCTATAGAGAATCTGTCTGGAGCTCTGCAGACGGTTGGAGATCTGTACATCACCTCCACCTTCATGCTGCCACCCAAACTCGGAGGCGTTTTATTTGGTCTCTATGATAAGCAGGACAACAAGAAATACCTAGAGATTGCTGTTGTAGGCAAGATCAACAAATTACTGGTGCGATACTTGCGTTCTGATGGCAAAGCTCATACTGTCAATTTACAAAACCCTGCTCTCGCAGAGGGACGCACACAGTCACTTATACTCAGAATTGGTGGACTTAGACGGAGTCACATAAACCTTGAGCTTTATGTGAACTGCCGTTTAGTCGACTCTGCTCAGGGATTGCCTTCATTCGTCGGACTTCCATCAGAGGCGGAATCTGTGGATGTTCGCACCGGACAGAAGTCTTATGCCAGGATACAGGGTTTAGTAGAATCTGTTAAACTGGCTCTCGGAGGCTCTTTGGCTACTGCTGGTCTCCTCATTGACTGTCCGTTTCAAGGAGATTCAGCAATAAACAATGCAGTGGTCAGTGACATTAATGCCATCCTTGGTGATCACACCAAAGCTCTGATTGGACAGCTGATCATCTTTAACCAGATCATGGGAGAGCTGAGAGAGGATATCAGAGAACAGactAAAGAGATGTCTCTAATCAGGAACACTATTCTTGAATGTCAAGTGTGTGGATTTCATGAGCCCCAGTCCCGGTGTCTTCCTAACCCATGCTATACCGGTGTAAGCTGCATGGAGAGCATGATGTACCCAGGATATCAGTGTGGCCCCTGTCCAGAGGGTATGACGGGCAACGGGACACACTGCCAGGATATTGATGAGTCCTGTCCTATAGGATTCACCGGTCCAACACTCAAAGGGGTTGgtttggaatttgccaaaagacaCAAACAgCATTGTGTTGATATTGATGAGTGTGCTGAGCTCTCCGGTTCCTGTGTGCCAAACTCAGTCTGCATAAACACAGTGGGATCGTTCAAGTGTGGCCAGTGCAAAGCAGGATTTGTGGGAAATCAGACTGTAGGCTGTTTTGCAAGGAGAACATGTGAAACTCTTGGCTATAGCCCCTGTGATGTCAACTCACACTGTGTGATGGGACGCAATAGTGACGTGTCCTGTGTGTGTAATGTTGGCTGGGCAGGTAATGGGAACATCTGTGGTCCAGACTCAGACATTGATGGTTACCCTGATGAACCTCTTCCATGTATGGACAATGACAAACACTGCAGAGcgGATAATTGTGCAAACACTCCAAACTCTGGGCAGGAGGATACAGATGGAGATGGCATTGGTGATCAGTGTGACGAGGATGCAGATGGAGATGGAATTAAAAACGTTGAGGACAACTGTCGTCTGGTGCCCAACAAGGACCAGCAGAACTCTGACACAGACTCCTATGGTGATGCTTGCGACAACTGCCCCAACGTACCCAACGGCGATCAGCTTGATACTGATGGCAATGGCAAGGGAGACATCTGTGACACTGATATTGATGGAGATGGGATCCCTAACGTTTTGGATAACTGTCCTAAAATACCCAACCCCATGCAGACAGACCGAGATGGAGATGGTGTGGGGGATGCATGTGACAGCTGTCCTGAGGTCAACGACCCACTGCAGTCAGACATGGACAATGATCTGGTGGGAGATGTATGTGATACAAACAAGGACATTGATGGTGATGGATATCAGGACACCAGGGATAACTGTCCTGAAGTGCCCAACAGTTCTCAGCTGGACTCTGATAATGACGGCATCGGGGACGAAtgtgacgatgatgatgataatgatggcATCCCGGATATTCTCCCTCCAGGCCCAGATAACTGCAGACTCGTTCCCAACCCCAGTCAAATAGACACTGATGCCAATGGAGTTGGTGACGTGTGTGAAACTGACTTCGACAATGATAAAGTGACTGACCTGTTAGATGCGTGTCCTGAAAGCGCAGAGGTCACTATGACAGATTTCAGAGCTTTCCAGACAGTCATTCTTGACCCAGAAGGTGATGCTCAGATTGACCCCAACTGGGTGGTACTGAATCAGGGAATGGAGATTGTGCAGACTATGAACAGTGACCCTGGTTTGGCTGTGGgctacacagcATTTAATGGTGTTGATTTTGAGGGCACGATCCATGtgaacacagccactgatgatgATTACGTGGGCTTCATCTTTGGCTATCAGGACTCATCCAGCTTCTATGTGGTGATGTGGAAACAGACAGAACAGACGTACTGGCAGAATTTACCATTCAAAGCCTTGGCTCAGCCTGGAATACAGCTGAAGGCAGTGAAGTCTCGTACGGGTCCGGGTGAGTATCTACGTAATGCCCTGTGGCACACAGGAGACACAACAGGGGAAGTTACTTTGCTCTGGAAGGACCCCAGAAATGTTGGCTGGAAGGACAGAGCATCCTATCGCTGGCACCTCTCTCACCGTCCACAGGTGGGATACATAAGATTAAGACTATATGAAGGTACAGCGCTGGTGGCAGATTCAGGAGTTGTGATTGACTCCACTATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTCTCTCAGGAAAATGTCATATGGTCCAATCTTGGCTATAGATGCAATGATTCTATACCAGATGACTTTATGCTGTACCACAAGCAGATGAAACTGAGGACATAA
>TCONS_00029198
AATACATTTCCTAAACCCAAGCTCAGATCTATATTTAGTTGTCGGAAACCAAAACTTTGACAGATATTTTCTTTTGCACGGTGAAATTCAATAGTCAGACAGGAGCTCAGCGCGGTAAACTGAAGACGCAGCGGGAGAGACCCGCAATAAATAGTTGTAGGTTGATTGACAAGCCTCGTTATCTCTCCCCCTGCCGTCGCCTGCAGCTCAACTTCTGTTTCTCATTTGGGAAAGAAAGTGTTGCGCTGCAGAGTCTCGGTGGACCCGCAGACTCTCACCCGCGCAGACTCTTTGAACCCCGGGCCGCTTAGGTCACAGAGACGCCGAGAAAGCGGTCAGAGGGTGAACGTAATGTTATGAAGATCGCCGATGCGTCGAGCTGTTCTTGTGTTTTACGACGGACAAAGAGGAACTTAACTGGATTACATTCGCTTTATTAAACAGTAGGCTTTTGTTGGACTTGGTTCAAGAGGATGGAGCTGAGGAAAATTGTGCCAAACCTGCTTGTTCTGTATGTTGCTGTCCACTTTTCTCAATCGTCCGAAATTAAAGTAATCAATGTGCTGGAGCTTCATGATGTCCGTCAGACAGCAGCAGCTATAGAGAATCTGTCTGGAGCTCTGCAGACGGTTGGAGATCTGTACATCACCTCCACCTTCATGCTGCCACCCAAACTCGGAGGCGTTTTATTTGGTCTCTATGATAAGCAGGACAACAAGAAATACCTAGAGATTGCTGTTGTAGGCAAGATCAACAAATTACTGGTGCGATACTTGCGTTCTGATGGCAAAGCTCATACTGTCAATTTACAAAACCCTGCTCTCGCAGAGGGACGCACACAGTCACTTATACTCAGAATTGGTGGACTTAGACGGAGTCACATAAACCTTGAGCTTTATGTGAACTGCCGTTTAGTCGACTCTGCTCAGGGATTGCCTTCATTCGTCGGACTTCCATCAGAGGCGGAATCTGTGGATGTTCGCACCGGACAGAAGTCTTATGCCAGGATACAGGGTTTAGTAGAATCTGTTAAACTGGCTCTCGGAGGCTCTTTGGCTACTGCTGGTCTCCTCATTGACTGTCCGTTTCAAGGAGATTCAGCAATAAACAATGCAGTGGTCAGTGACATTAATGCCATCCTTGGTGATCACACCAAAGCTCTGATTGGACAGCTGATCATCTTTAACCAGATCATGGGAGAGCTGAGAGAGGATATCAGAGAACAGactAAAGAGATGTCTCTAATCAGGAACACTATTCTTGAATGTCAAGTGTGTGGATTTCATGAGCCCCAGTCCCGGTGTCTTCCTAACCCATGCTATACCGGTGTAAGCTGCATGGAGAGCATGATGTACCCAGGATATCAGTGTGGCCCCTGTCCAGAGGGTATGACGGGCAACGGGACACACTGCCAGGATATTGATGAGCATTGTGTTGATATTGATGAGTGTGCTGAGCTCTCCGGTTCCTGTGTGCCAAACTCAGTCTGCATAAACACAGTGGGATCGTTCAAGTGTGGCCAGTGCAAAGCAGGATTTGTGGGAAATCAGACTGTAGGCTGTTTTGCAAGGAGAACATGTGAAACTCTTGGCTATAGCCCCTGTGATGTCAACTCACACTGTGTGATGGGACGCAATAGTGACGTGTCCTGTGTGTGTAATGTTGGCTGGGCAGGTAATGGGAACATCTGTGGTCCAGACTCAGACATTGATGGTTACCCTGATGAACCTCTTCCATGTATGGACAATGACAAACACTGCAGAGcgGATAATTGTGCAAACACTCCAAACTCTGGGCAGGAGGATACAGATGGAGATGGCATTGGTGATCAGTGTGACGAGGATGCAGATGGAGATGGAATTAAAAACGTTGAGGACAACTGTCGTCTGGTGCCCAACAAGGACCAGCAGAACTCTGACACAGACTCCTATGGTGATGCTTGCGACAACTGCCCCAACGTACCCAACGGCGATCAGCTTGATACTGATGGCAATGGCAAGGGAGACATCTGTGACACTGATATTGATGGAGATGGGATCCCTAACGTTTTGGATAACTGTCCTAAAATACCCAACCCCATGCAGACAGACCGAGATGGAGATGGTGTGGGGGATGCATGTGACAGCTGTCCTGAGGTCAACGACCCACTGCAGTCAGACATGGACAATGATCTGGTGGGAGATGTATGTGATACAAACAAGGACATTGATGGTGATGGATATCAGGACACCAGGGATAACTGTCCTGAAGTGCCCAACAGTTCTCAGCTGGACTCTGATAATGACGGCATCGGGGACGAAtgtgacgatgatgatgataatgatggcATCCCGGATATTCTCCCTCCAGGCCCAGATAACTGCAGACTCGTTCCCAACCCCAGTCAAATAGACACTGATGCCAATGGAGTTGGTGACGTGTGTGAAACTGACTTCGACAATGATAAAGTGACTGACCTGTTAGATGCGTGTCCTGAAAGCGCAGAGGTCACTATGACAGATTTCAGAGCTTTCCAGACAGTCATTCTTGACCCAGAAGGTGATGCTCAGATTGACCCCAACTGGGTGGTACTGAATCAGGGAATGGAGATTGTGCAGACTATGAACAGTGACCCTGGTTTGGCTGTGGgctacacagcATTTAATGGTGTTGATTTTGAGGGCACGATCCATGtgaacacagccactgatgatgATTACGTGGGCTTCATCTTTGGCTATCAGGACTCATCCAGCTTCTATGTGGTGATGTGGAAACAGACAGAACAGACGTACTGGCAGAATTTACCATTCAAAGCCTTGGCTCAGCCTGGAATACAGCTGAAGGCAGTGAAGTCTCGTACGGGTCCGGGTGAGTATCTACGTAATGCCCTGTGGCACACAGGAGACACAACAGGGGAAGTTACTTTGCTCTGGAAGGACCCCAGAAATGTTGGCTGGAAGGACAGAGCATCCTATCGCTGGCACCTCTCTCACCGTCCACAGGTGGGATACATAAGATTAAGACTATATGAAGGTACAGCGCTGGTGGCAGATTCAGGAGTTGTGATTGACTCCACTATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTCTCTCAGGAAAATGTCATATGGTCCAATCTTGGCTATAGATGCAATGATTCTATACCAGATGACTTTATGCTGTACCACAAGCAGATGAAACTGAGGACATAA

Function

symbol description
thbs3b Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS3 (thrombospondin 3).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-84 Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS3 (thrombospondin 3).

Ensembl:

ensembl_id ENSDARG00000012060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029197 False 2790 mRNA 0.48 23 24419693 24443394
TCONS_00029199 False 3266 mRNA 0.48 23 24419693 24443867
TCONS_00029198 True 3194 mRNA 0.48 22 24419693 24443867

Neighbor

gene id symbol gene type direction distance location
XLOC_014793 NA coding downstream 26661 24388065 ~ 24393032 (-)
XLOC_014792 s100v2 coding downstream 151870 24262263 ~ 24267823 (-)
XLOC_014791 prf1.7 coding downstream 195401 24221868 ~ 24224292 (-)
XLOC_014790 BX547993.3 coding downstream 200751 24214225 ~ 24218942 (-)
XLOC_014789 prf1.7 coding downstream 221509 24196088 ~ 24198184 (-)
XLOC_014795 mtx1b coding upstream 4717 24448584 ~ 24484758 (-)
XLOC_014796 polr3gla coding upstream 101864 24545731 ~ 24555949 (-)
XLOC_014797 myo1g coding upstream 196600 24640467 ~ 24745894 (-)
XLOC_014798 NA coding upstream 242843 24686710 ~ 24688179 (-)
XLOC_014799 si:dkey-154b15.1 coding upstream 306599 24750466 ~ 24758109 (-)
XLOC_014711 CR382300.3 misc downstream 4690938 19728690 ~ 19728755 (-)
XLOC_014788 BX547993.1 non-coding downstream 230950 24187594 ~ 24188743 (-)
XLOC_014787 BX547993.2 non-coding downstream 236802 24182775 ~ 24182891 (-)
XLOC_014785 NA non-coding downstream 274016 24141315 ~ 24145677 (-)
XLOC_014784 BX547993.4 non-coding downstream 279799 24139780 ~ 24139894 (-)
XLOC_014800 BX927310.2 non-coding upstream 312976 24756843 ~ 24756974 (-)
XLOC_014804 CU915256.1 non-coding upstream 612945 25056812 ~ 25060877 (-)
XLOC_014806 CU915256.2 non-coding upstream 640398 25084265 ~ 25086092 (-)
XLOC_014808 CR855860.1 non-coding upstream 711675 25155542 ~ 25157191 (-)

Expression


Co-expression Network