XLOC_014799 (si:dkey-154b15.1)


Basic Information

Item Value
gene id XLOC_014799
gene name si:dkey-154b15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24750466 ~ 24758109 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029206
TCTGATGACGTGATTTCCGGCTCGTTCTTTCACAGGGGAACGGCTGTGGTAGCAGGAGTTGTGGCGTTGAGTCTGTATTTAAAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGTTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAACTCATGGAGAGGAATGTATTGCGACGCAGCAGCTCTTTGACAAGAAAAAACACAAGGCAGAGAATGGAGAATCTTGAACTTGAACGTCCTGTTGCTCTGAACACTACTTCTGCGAGTAGCTCTTCTGCCTCACGTTTTCAAAAGGACTCTGAATTGCAGCTAGAAGTACCACAGGAAAGAGGTAGAACACCTAAATCTATGACACAACGTGTACGCTCACAGAGCGCCACTCGATCAAAACACAAATCTCAGGGTAATCAAGTAAACCGGGAACTGTCAAATTATGATCAGCAGAATTCAAAACCATCTAATGAAGCCCAGAAATCTAACCCAATACCAAAAATCTTAGCTGCTCTTCGACctgaaacaaatacaaaaattcaTCAAAAATTTTTCAAAGTGACTAAATCTAATAAATAAGACACACTGATGACAACTTTATTTTCCTGGCAATATTTTCTTATAGTCTTTATTAGTATGTAATATTGCTGTGGCAAAGTTACAAAGCTCAGACATCAACTCCAAAGTGAGGTATTCTTATTCTAACAGAAAGCAGTTTTCAAGAACAATGGTGaatggcttttttattttttatttgtgaattccAAAAGAAATTCATTTGATAATTTAAGCTAaccaaaacacaaaagaggaagGACCTGGTTAATCTCATACAGACAACAATCTTTTACGTTTTAGACATGTGTtggtattagggatgtaacggtatcagaatttcacggtacggtaatacctcggtatgaatgtcacggtacggtatttattgaatcatttacaggaaaaaaaaaacttttgaaaatactccaaaaaagtgccaaaagtgtcaatgacatacaaattagccatctatctgttagctttgaaacaggaacttcaattttaataacaaaaaattattaaaccatgtaaaaaaattaagtttcaatttagtattgttaaaaactcatcacatttaacatttaatcactcacttagatagagatgggtttaaaggaaaattatcatataactataatctggtaaaagctggtatctctgagtatttacaatgtcccctgcaacagaaaaaacccctctcatttgggactgaggattctgggacaagagagatatgacttggcccatgttgacagcagtggggtaacgttgtgcattgtctttcccccacttgagaggacaaaccatgagtgagatagagatctctttgcggtacaagtcaatgtctgcatcaatctgaacagtgtgctgtgtttctgcagtccccatgactgttattagtcgtattccccaacttgctggcacgtgcacacatagggctcaacctgtgcagtgcacatgccctttttagtcttggatagaaaatgcccttccaaaacgatcaaaagtgcccccgcgacgcgacacaacctccgtccagtccagcccttcagtaggcgcgcgataacacctctcttgagtatgcgcgctcaaccccccctcggcgctttacaatacgcgcgccacaacacagctgatcagaacgcgcgcgacagcaccgctattcagcacgcgcgcggcgacaacacccgctttaggttcgatcatttccatctttttttcatctccgctactagcagcacactccatttccgcattactggatctgtagcgacagcagaccgcaaaggattatggccacgccggggctgatgggaaatgaagttccagctacctcccgttcgcttcattcgcctgagcaaattttctcagaagacctatagttttaccgagtcatgcgacttcggtaatatcgaaaaaatttaatattgcggtatgacggtatttacaataccgttacatccctagttggTATCATGCTTAATTGCTTGTTTCACACTGGATGCAGAAGCTGATTGGTAGAAATGCAAAAATGTGtctataacaaacaaaaatagcgTGTGTAACATTTGTCACACACAGTTGCACTGTAGCTGTTGTACTACTCAGTTTATTGTATCACCTTTTCGTCTTAAGTTTTGAATACTTTGCTATGATGCAGTCTTGTTTCCCTTTCACTGACCCACACATAGGCCTACTATATGCTGTAGATAGATCTCTGTGATCCCCATGATTTATTTTACATGATAATTAAAATCTTAAAGTTAAGGTATACCTCTAGTTTCAATCATTCAGATATATCTTTTAAGTTAAGccaaaaacaattattataacaCTACGCCAGCTCACCAATCAGAGCACATTTTGTTTTTTGGAAAGTGGGCATTCATAAAAAATTGAACTAAATGGAGTGCTTTGTGGTACACTGACAAGAGAGGTACTACAATattgaaatatgttgaaaaataatgcattattaaaacagCTAACTATGAAAATCAACGTGCAccccaaaaacaaaatcaaaacttttcaaaaatgctTAAGGGGAAACTTTTCccaaaaataaaggatttgtcatcattta
>TCONS_00030236
GCTGTGGTAGCAGGAGTTGTGGCGTTGAGTCTGTATTTAAAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGGTAATCAATTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAACTCATGGAGAGGAATGTATTGCGACGCAGCAGCTCTTTGACAAGAAAAAACACAAGGCAGAGAATGGAGAATCTTGAACTTGAACGTCCTGTTGCTCTGAACACTACTTCTGCGAGTAGCTCTTCTGCCTCACGTTTTCAAAAGGACTCTGAATTGCAGCTAGAAGTACCACAGGAAAGAGGTAGAACACCTAAATCTATGACACAACGTGTACGCTCACAGAGCGCCACTCGATCAAAACACAAATCTCAGGGTAATCAAGTAAACCGGGAACTGTCAAATTATGATCAGCAGAATTCAAAACCATCTAATGAAGCCCAGAAATCTAACCCAATACCAAAAATCTTAGCTGCTCTTCGACctgaaacaaatacaaaaattcaTCAAAAATTTTTCAAAGTGACTAAATCTAATAAATAA
>TCONS_00030235
GCTGTGGTAGCAGGAGTTGTGGCGTTGAGTCTGTATTTAAAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGTTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAACTCATGGAGAGGAAAAAACACAAGGCAGAGAATGGAGAATCTTGAACTTGAACGTCCTGTTGCTCTGAACACTACTTCTGCGAGTAGCTCTTCTGCCTCACGTTTTCAAAAGGACTCTGAATTGCAGCTAGAAGTACCACAGGAAAGAGGTAGAACACCTAAATCTATGACACAACGTGTACGCTCACAGAGCGCCACTCGATCAAAACACAAATCTCAGGGTAATCAAGTAAACCGGGAACTGTCAAATTATGATCAGCAGAATTCAAAACCATCTAATGAAGCCCAGAAATCTAACCCAATACCAAAAATCTTAGCTGCTCTTCGACctgaaacaaatacaaaaattcaTCAAAAATTTTTCAAAGTGACTAAATCTAATAAATAA
>TCONS_00029207
CTACTAAATACAGCGTGGTTATAGAAACTCCAGATAAACATTCCTTCAGGAATGTGATTTAATGTCTCACCTTTGCTTGTAAAGTTATTCACTGAAGTTGTCTTTCTCTTACAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGTTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAA
>TCONS_00029208
CGGCTGTGGTAGCAGGAGTTGTGGCGTTGAGTCTGTATTTAAAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGGTAATCAAGTAAGATTGAATATTGTTGAATAATGTAAAATTGTTGATTGTAATACTTTTTGCATAATGTGTTGGTTCAAATAGTAAGTTATATAGCAAGTTATATTGAATGTGAAATTATTTGCAAAGAAATGTTTGTGtgggttaagttttttttttttatctgatgaaactaaataaagaaatattat
>TCONS_00029210
CTGCAGGCTGTTCAGCGAGGCTGAGTCTCCTGTGACTCTGTCCTTTCCTTTATGTCTGCTAGATAGACATGGAGTGGTTTGAGACCCTGTTGTCTACTAAATACAGCGTGGTTATAGAAACTCCAGATAAAC

Function

symbol description
si:dkey-154b15.1 Orthologous to human RBM43 (RNA binding motif protein 43).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-52 Orthologous to human RBM43 (RNA binding motif protein 43).

Ensembl:

ensembl_id ENSDARG00000057010 ENSDARG00000081895

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029206 False 3887 mRNA 0.40 6 24750466 24758109
TCONS_00030236 False 1788 lncRNA 0.41 6 24752531 24758067
TCONS_00030235 False 1748 lncRNA 0.41 7 24752531 24758067
TCONS_00029207 False 1432 mRNA 0.41 5 24752951 24757231
TCONS_00029208 False 357 lncRNA 0.33 3 24756545 24758069
TCONS_00029210 True 132 snoRNA 0.46 1 24757193 24757324

Neighbor

gene id symbol gene type direction distance location
XLOC_014797 myo1g coding downstream 4572 24640467 ~ 24745894 (-)
XLOC_014798 NA coding downstream 62287 24686710 ~ 24688179 (-)
XLOC_014796 polr3gla coding downstream 194517 24545731 ~ 24555949 (-)
XLOC_014795 mtx1b coding downstream 265708 24448584 ~ 24484758 (-)
XLOC_014794 thbs3b coding downstream 306599 24419693 ~ 24443867 (-)
XLOC_014801 si:ch211-195b13.6 coding upstream 180027 24938136 ~ 24958393 (-)
XLOC_014802 xkr8.1 coding upstream 224563 24982672 ~ 24988640 (-)
XLOC_014803 xkr8.2 coding upstream 236161 24994270 ~ 25005609 (-)
XLOC_014804 CU915256.1 coding upstream 298703 25056812 ~ 25060877 (-)
XLOC_014805 xkr8.3 coding upstream 313944 25072053 ~ 25081711 (-)
XLOC_014711 CR382300.3 misc downstream 5021711 19728690 ~ 19728755 (-)
XLOC_014793 NA non-coding downstream 357434 24388065 ~ 24393032 (-)
XLOC_014788 BX547993.1 non-coding downstream 561723 24187594 ~ 24188743 (-)
XLOC_014787 BX547993.2 non-coding downstream 567575 24182775 ~ 24182891 (-)
XLOC_014785 NA non-coding downstream 604789 24141315 ~ 24145677 (-)
XLOC_014806 CU915256.2 non-coding upstream 326156 25084265 ~ 25086092 (-)
XLOC_014808 CR855860.1 non-coding upstream 397433 25155542 ~ 25157191 (-)
XLOC_014813 BX842688.1 non-coding upstream 760311 25518420 ~ 25518540 (-)
XLOC_014820 NA non-coding upstream 2021437 26779546 ~ 26780698 (-)

Expression


Co-expression Network