XLOC_014801 (si:ch211-195b13.6)


Basic Information

Item Value
gene id XLOC_014801
gene name si:ch211-195b13.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24938136 ~ 24958393 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029211
cacacacacacacacacacacacttgggaGGAGTTTATGTGTGTCAGATTACTTTCTGTTTCAACTCTTTAACATCACGGTTAAAAAGGAGTATCAAGTTTATGCTATAAGGCTTATCAAACTGGACAGAATCATGGAGGCGAGCTCCACTTTTCATTACTCTTTTGTGTATTACCTGTTTACTTGGATTGGACTGTTTCTTTTCCTGCTGGATATAGTAATGGACATCCGAACTGTTGTGTCACTTTATCAGGAGGAAGCTTATGTGTTTATGGGGCTGATGATCTTCTTTCTAGTGGGCTCCTCAGTGTTATTACAGGTATTCAGTTGGATCTGGTACTCTGATTCTCTGGATGAGCTTGAAACTGAGGTGGAGAAAtttacaaaggaaaaaaaattgatCAAACCATTTCACTTTCTGCAGCTTGGGGTCTACCTCAGATATGCTGGAGTGATTGAAATGTCCACAAAACTTTTTCTTCAGCAAAGAAGAATTTTCAAAGAGAGTACGTTCCTGAACCTTGACTTTCAGTTGCTTGGTCTATTTGAGACATTTACTGAAAGTGCTCCACAACTCATTCTCATGGCGACTTTAATGCTACAAAGAGGAGAGCTTCAGCTTTTCTCAGGATTAAAATTCCTCGCATCAGCTGCTTCAATTGCCTTTACCCTTGCCATGTACCACAACGGCATCCGTGCTAATTTTGATGTAAAATGCTGGACCGCCTCTGCTATCTATTTGCTGTGGAACATTCTATTGATCATTACCCGTGTGGCTGTTCTGGCACTCTTCTGCAGTGTATTCCCGTGCCACATCGTTGCTCATTTTCTATCTTTGTGGATGGTGCTGGTGTTTGTGGCCTGGAGACAGAAAACAGATTTCATGGAAAGCAGCGGCTGGCAATGGCTTTTCAAAGCTACAGTTGGACTCATCTGGTATTTCAGCTGGTTTAATATCTCAGAAAGTAATACAAATTTAAACCATGCTGTTTATTGTATCTTCTTGCTGTTAGACATGATGATGCTTTTGGGCTTCTGGAGCTGGAAGGTGACTGAGTATGCAGGCTCCTGGACCTCTTTAAACCCTACTGTAATTATCCCAACAATACTAGGATTGTATATCATTGGAAATCTAGTGATGATGATGAACTACAAATGGTTTTATACTAGCTACAAACAGAAAATAGAAGAACTCAGTAATAAAATCAAAgaaggtaaaattaaaaaagtaagaCCATTAGGTTATAGGGCTGAGACAGAAACTGTAGATAAAGTTCCTGGAGTTCTCCTGCGAAGTAGAACCATGGCTGCAGATTTCTACTTTTAGTTTTAAAATCAACTTTACAAACACTTCCTATTTCCTGTTGTGTTTCCCCCACCATTCTTAAACTGTTATATACAATGTACTTATTCTCATAGGTATTACTGCACTCTAAAGGTCGAAAATAATTACTGATAGTGAATATCTCAGAATTGActaaattttttactttaaaaaatgttgtcacaccagccaaaatttagtcgcccTTACTAAGAATTATGTGCACCGt

Function

symbol description
si:ch211-195b13.6 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR8 (XK related 8).

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-27 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR8 (XK related 8).

Ensembl:

ensembl_id ENSDARG00000078841

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029211 True 1553 mRNA 0.39 3 24938136 24958393

Neighbor

gene id symbol gene type direction distance location
XLOC_014799 si:dkey-154b15.1 coding downstream 180027 24750466 ~ 24758109 (-)
XLOC_014800 BX927310.2 coding downstream 181162 24756843 ~ 24756974 (-)
XLOC_014797 myo1g coding downstream 192242 24640467 ~ 24745894 (-)
XLOC_014798 NA coding downstream 249957 24686710 ~ 24688179 (-)
XLOC_014796 polr3gla coding downstream 382187 24545731 ~ 24555949 (-)
XLOC_014802 xkr8.1 coding upstream 24279 24982672 ~ 24988640 (-)
XLOC_014803 xkr8.2 coding upstream 35877 24994270 ~ 25005609 (-)
XLOC_014804 CU915256.1 coding upstream 98419 25056812 ~ 25060877 (-)
XLOC_014805 xkr8.3 coding upstream 113660 25072053 ~ 25081711 (-)
XLOC_014806 CU915256.2 coding upstream 125872 25084265 ~ 25086092 (-)
XLOC_014711 CR382300.3 misc downstream 5209381 19728690 ~ 19728755 (-)
XLOC_014793 NA non-coding downstream 545104 24388065 ~ 24393032 (-)
XLOC_014788 BX547993.1 non-coding downstream 749393 24187594 ~ 24188743 (-)
XLOC_014787 BX547993.2 non-coding downstream 755245 24182775 ~ 24182891 (-)
XLOC_014808 CR855860.1 non-coding upstream 197149 25155542 ~ 25157191 (-)
XLOC_014813 BX842688.1 non-coding upstream 560027 25518420 ~ 25518540 (-)
XLOC_014820 NA non-coding upstream 1821153 26779546 ~ 26780698 (-)

Expression


Co-expression Network