XLOC_014808 (CR855860.1)


Basic Information

Item Value
gene id XLOC_014808
gene name CR855860.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25155542 ~ 25157191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029226
aacaagaaaatgaatgaatgaatgaggaggAAGGGGGGCTTTCTTTCAGATTAAGATAGTTGTAGAGAGGACCTGAGGATTTATATactgacttgggatcctttgattggaggaccATGATTAGCATATGTGGGCTagttcctctcgaaattagtttaatattaaacttcaATTAgatcagcatctaaggacaacattatttttgacatttaacaaacaaattcaaatgacgttgatatttggttaggttgattttaggttggaagtTGGAAGTTAACGTTAGGTCGTGGCGTCAACtgaattttcatttccaaacaaaatgcatcgTCCTCAAGACGTTGGATTGCAATGTCAATCTGATGACATGTTGAcgttctgtgcctgctgggatattGATATCTTAAGAGCCAAAAAAAtagcaaaattaagacctgtgGATCCTCATGAtattttaaagtctgtgtaatGTATAGTTTAGACTAGTAGTTTAGCTTCATAAGATCTCAATGCATCATTCCATTGACTTGCACTTTTTATCATTCCTCTATTATCACAGTTTCAACTAAAACTCTATATTAATGTTCTACTAAAGAAacaaaaagtcacctacatcttgggtGGTCTGAGATTTGAATAAATTAAGATTGAATTGTCATTTTTAGCTACAATACATTCATTATATTGCTTGCATGAGCACAAGGACATTAGTATCGAACAATCATTcaatttattttctattaaaattgATTTAGTTTTGCTGGAAAAACTGACATAAAACATAGGATAACTATTGCTTTTATTTGTgcttaaattaaaatattcagCGCATGCCTGCTTgatcattttaattcattcaaattTGTAAACATTGAATAGTCTGCATTGTAATTTACTGCAGCATGTTTGTGTATATTCTCTCCGTCATGCAGTGTCTTTaagttgcttttttatttgtgatCACACTTAACTAAAACATtggattaaaaatgtatatttatttcacatgATTCCAACCTTGAATTTATTGTACTTTTAGGTCAGACTTAAAAGACTGTAAatggcaatttatttatttattttgcaaatgcAAAGACAGTCATTTATAGTCTGTTTTATCATCCACGTAGCAAAGCCATtagtatttcttttgtttttgccagAAATCAGCCATTCATATAATTCATGACATTGTGAACAGCACAATGCACTGTTTGGACATGCTCACCTTTGCAGAGTGAGGTTTTCAACGTTCACTAGAAATGTAGCTACTTGGCCATATCCATTATATTTTAACCCACACCAGTTACCTTTTTGGAGAGCTCGATCAAAGTAGGGGAGTCCCTGAAACTTTTAGAAAATGGTTTGAGCTGACAGTCTGCTGCTGTTTGGGAATGACAGAATGGTAAAGAGTTGTCTGGGGAAGCTGTAATTTTATACTTgtgctttgtaaatgttttctATGTGCAGTATTTGATAATGTAAAACTGGTATTTTTGTGGTTTGTACGCTGCAGAACTGATTATTTAAAGTGCACGCCATTTTGTAAGAAAAGGATGGGGAaacttacaaaaaatattttgactGAAGCCTGTATTTGCATGCCTATTGACTGCTGGAAGCTGGAGGtcaataaattttatttgaatCATC

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029226 True 1650 lncRNA 0.34 1 25155542 25157191

Neighbor

gene id symbol gene type direction distance location
XLOC_014807 ptp4a3a coding downstream 5944 25088150 ~ 25149598 (-)
XLOC_014806 CU915256.2 coding downstream 69450 25084265 ~ 25086092 (-)
XLOC_014805 xkr8.3 coding downstream 73831 25072053 ~ 25081711 (-)
XLOC_014804 CU915256.1 coding downstream 94665 25056812 ~ 25060877 (-)
XLOC_014803 xkr8.2 coding downstream 149933 24994270 ~ 25005609 (-)
XLOC_014809 rims3 coding upstream 6349 25163540 ~ 25301711 (-)
XLOC_014810 glcci1a coding upstream 195098 25352289 ~ 25427255 (-)
XLOC_014811 umad1 coding upstream 277959 25435150 ~ 25464291 (-)
XLOC_014812 si:dkey-202e17.1 coding upstream 355606 25512797 ~ 25519612 (-)
XLOC_014813 BX842688.1 coding upstream 361229 25518420 ~ 25518540 (-)
XLOC_014711 CR382300.3 misc downstream 5426787 19728690 ~ 19728755 (-)
XLOC_014800 BX927310.2 non-coding downstream 398568 24756843 ~ 24756974 (-)
XLOC_014798 NA non-coding downstream 467363 24686710 ~ 24688179 (-)
XLOC_014793 NA non-coding downstream 762510 24388065 ~ 24393032 (-)
XLOC_014820 NA non-coding upstream 1622355 26779546 ~ 26780698 (-)
XLOC_014821 NA non-coding upstream 1629709 26786900 ~ 26788280 (-)
XLOC_014822 NA non-coding upstream 1646678 26803869 ~ 26807219 (-)
XLOC_014824 FP085398.2 non-coding upstream 1670990 26828181 ~ 26837124 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G170050 NA non-coding CI01000034 null 2823711 ~ 2824116 (+)
rainbow trout (Oncorhynchus mykiss) G2291358 NA non-coding NC_050572.1 CM025859.1 5873826 ~ 5876241 (+)
tiger barb (Puntius tetrazona) G130855 NA non-coding NC_056717.1 CM032086.1 5614264 ~ 5632428 (+)
mexican tetra (Astyanax mexicanus) G197547 NA non-coding NC_035919.1 CM008322.1 14069804 ~ 14074420 (+)