XLOC_014809 (rims3)


Basic Information

Item Value
gene id XLOC_014809
gene name rims3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25163540 ~ 25301711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029227
ATGATGCTCAGCAGCTCAGTGGACGTACCCAGCCCAGGCGGGATGAGTGCAGTGGCAGCCCGAAATGTGGTCCGCAGTTCCAGCATCAGTGGAGCCATGTACAGCTTGGAGAAAAGCCCCAGCAGCACAGGACCCGACGGCACCAGCCTGACCGGAAACAAGAAGCGTCGCTCCAGCCTCGGAGCCAAGATGGTGGCTATTGTGGGTCTGTCACAGTGGAGCAAGAGCACACTGCAACTCAACCAGCAAGATGGCGGAACCAAGAAGCTGCGCAGTACCATCCGGCGGAGCACAGAGACGGGTATTGCAGTGGAGATGAGGAACCGCGTCACACGGCAGGGCAGTAAGGATTCAACAGACGGAAGCACCAACAGCAACAGCTCTGACGGAACGTTCATCTTCCCCACCACTCGCCTGGGCCCTGAGAGCCAGTTCAGTGATTTTCTGGATGGCCTTGGTCCTGCTCAGATAGTGGGGCGTCAGACATTAGCCACACCATCAATGGGTGATGTGTACATCGGTGTGGTGGACAGAGGAGGTCAGTTAGAGGTCGAGATTACACAGGCCCGAAGTCTGACCCCTAAACCAGGCTCCAAGAACATTCCAGCAACATATATAAAGGTTTATGTCCTGGAGAACGGGATGTGTCTTGCTAAGAAGAAAACCAAAGTGGTGAAGAAAACCCTGGATCCAACCTTCCAGCAGTCCCTGATGTTTGATGAGAGCCCGCAGGGGAAAGTGCTACAGGTGATCGTGTGGGGTGATTACGGCCGCATGGACAGCAAGTGTTTCATGGGAATGGCTCAGATCCTCCTGGATGATCTGGATCTGTCATCGATGGTGGGGGGTTGGTACAAGCTTTTCCCCACCTCCTCTCTGGCAGACCCCAGCATCGGCCCCCTGACCCGCCGCCTGTCCCAGTCCTCCCTCGAGAGTGCCACCAGCCCTTCATGCACCTAG
>TCONS_00029228
GTTTGCTCAGTTCATGACCCTTTCAAAACCAGTCGCATCGCCACTAGCTCGTCTCCTTCCCCGCTGGTGCCCAGTGGATCAGGTGTGTAACCATGGAGACGCGCTCGCGGTGAGGAGGCAGGATCATTCGCGCGCGCCTCTCGCTCGCTCCCTCCCTGCTCGCGCGCGCTCCCCAGTCAGTCTCTGtttcgcgctctctctctctgtggatGCAGGAACCGTCCAGACACTTGCACAagaacataaaataaacacaaacaatgaCATTATCTGCAACGACCCGACAGAAACACGGCATTATCTGACTGACTGAAACTATCCCGCGCTTTTTCTGCACGCCGATTGCCGCCTCAGTCCACCCCTGTGACCAGAGGCTAGGACCATGATGCTCAGCAGCTCAGTGGACGTACCCAGCCCAGGCGGGATGAGTGCAGTGGCAGCCCGAAATGTGGTCCGCAGTTCCAGCATCAGTGGAGCCATGTACAGCTTGGAGAAAAGCCCCAGCAGCACAGGACCCGACGGCACCAGCCTGACCGGAAACAAGAAGCGTCGCTCCAGCCTCGGAGCCAAGATGGTGGCTATTGTGGGTCTGTCACAGTGGAGCAAGAGCACACTGCAACTCAACCAGCAAGATGGCGGAACCAAGAAGCTGCGCAGTACCATCCGGCGGAGCACAGAGACGGGTATTGCAGTGGAGATGAGGAACCGCGTCACACGGCAGGGCAGTAAGGATTCAACAGACGGAAGCACCAACAGCAACAGCTCTGACGGAACGTTCATCTTCCCCACCACTCGCCTGGGCCCTGAGAGCCAGTTCAGTGATTTTCTGGATGGCCTTGGTCCTGCTCAGATAGTGGGGCGTCAGACATTAGCCACACCATCAATGGGTGATGTGTACATCGGTGTGGTGGACAGAGGAGGTCAGTTAGAGGTCGAGATTACACAGGCCCGAAGTCTGACCCCTAAACCAGGCTCCAAGAACATTCCAGCAACATATATAAAGGTTTATGTCCTGGAGAACGGGATGTGTCTTGCTAAGAAGAAAACCAAAGTGGTGAAGAAAACCCTGGATCCAACCTTCCAGCAGTCCCTGATGTTTGATGAGAGCCCGCAGGGGAAAGTGCTACAGGTGATCGTGTGGGGTGATTACGGCCGCATGGACAGCAAGTGTTTCATGGGAATGGCTCAGATCCTCCTGGATGATCTGGATCTGTCATCGATGGTGGGGGGTTGGTACAAGCTTTTCCCCACCTCCTCTCTGGCAGACCCCAGCATCGGCCCCCTGACCCGCCGCCTGTCCCAGTCCTCCCTCGAGAGTGCCACCAGCCCTTCATGCACCTAG

Function

symbol description
rims3 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Orthologous to human RIMS3 (regulating synaptic membrane exocytosis 3).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:2000300 regulation of synaptic vesicle exocytosis biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0098831 presynaptic active zone cytoplasmic component cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0048788 cytoskeleton of presynaptic active zone cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060503-788 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Orthologous to human RIMS3 (regulating synaptic membrane exocytosis 3).

Ensembl:

ensembl_id ENSDARG00000062305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029227 False 960 mRNA 0.56 6 25163540 25271155
TCONS_00029228 True 1342 mRNA 0.56 7 25163540 25301711

Neighbor

gene id symbol gene type direction distance location
XLOC_014808 CR855860.1 coding downstream 6349 25155542 ~ 25157191 (-)
XLOC_014807 ptp4a3a coding downstream 13942 25088150 ~ 25149598 (-)
XLOC_014806 CU915256.2 coding downstream 77448 25084265 ~ 25086092 (-)
XLOC_014805 xkr8.3 coding downstream 81829 25072053 ~ 25081711 (-)
XLOC_014804 CU915256.1 coding downstream 102663 25056812 ~ 25060877 (-)
XLOC_014810 glcci1a coding upstream 50578 25352289 ~ 25427255 (-)
XLOC_014811 umad1 coding upstream 133439 25435150 ~ 25464291 (-)
XLOC_014812 si:dkey-202e17.1 coding upstream 211086 25512797 ~ 25519612 (-)
XLOC_014813 BX842688.1 coding upstream 216709 25518420 ~ 25518540 (-)
XLOC_014814 asns coding upstream 355101 25656812 ~ 25678002 (-)
XLOC_014711 CR382300.3 misc downstream 5434785 19728690 ~ 19728755 (-)
XLOC_014800 BX927310.2 non-coding downstream 406566 24756843 ~ 24756974 (-)
XLOC_014798 NA non-coding downstream 475361 24686710 ~ 24688179 (-)
XLOC_014820 NA non-coding upstream 1477835 26779546 ~ 26780698 (-)
XLOC_014821 NA non-coding upstream 1485189 26786900 ~ 26788280 (-)
XLOC_014822 NA non-coding upstream 1502158 26803869 ~ 26807219 (-)
XLOC_014824 FP085398.2 non-coding upstream 1526470 26828181 ~ 26837124 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_11032632_11091062 RIMS3 coding CI01000054 null 11032632 ~ 11091062 (+)