XLOC_014812 (si:dkey-202e17.1)


Basic Information

Item Value
gene id XLOC_014812
gene name si:dkey-202e17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25512797 ~ 25519612 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029231
tttagaaacaggtacACTTTTGGATTTTATACAGCTGTcccccccacttttaaaatgtccactatGCCCCTGGCTGCTAGGTAACAGCACCGTGTAATATTGTTGCTCCTGTCACAGTCATGTAGCTCAGAACAGAAATGCAACGTTGGATTCAAGCCAGAAGGTCAGAGTTTTATGCTGGGTAATGACACAGCCTCAAAACCTGCAGTCCAGAACCCAACACGTTCATGCCACATGGGGCAAACGCTGCGACACCATCTTGTACATGACCTCGAAGAACACGGACTTCCCCACGATAGGGCTCAATGTGTCAGAAGGACGCAATCAACTCTACTGGAAGACCATACGAGCCTTCCAGTACATTCACAAGCACCATTTGGATGATGCTGATTGGTTCCTCAAAGCTGACGATGACACATTTGTTGTCATTGAGAATTTGCGCCATAGCTTGTCCAAACACAGCTCAGAGGATCCTCTGTATTTTGGACGTCGCTTCAGGCCCTTTGTTGCACAAGGCTACATGAGTGGAGGGGCCGGTTACGTCCTCAGTAAAGAAGCTTTGAGAAGATTTGTGAAGGGGTTTGCTGATGGACTTTGTACGCACACCACAGAACTTGAGGATGTTGGAATGGGACAATGcatggagaaaatgaaagttgAGATGGGGGATTCCAGGGATGTGTTTGGGAGACAAGTCTTTCACCCTTACCCTCCAGGCAATTACTTGGTGAGACAGCTACGCAGACAACGACCCTGGTACCTCATCTATGATCATTATACTCCAGTTGAGgGTCCGGGATGCTGCTCAGATTTTGCCATCTCATTCCATTACATAAACGCAGTGGAAATGCACACATTGGAGTACTACACATATCATTTACGCCCGTATGGATACAAATACAGATTCAATCCAGATGAACTGAAATGAATCCAAACATAAGACGCCATGACTAGTGAAAATTAAGAATATATTTATTGAACattactttactgtagtaaatcataaatgttgtatttattgttttataatacataataaaacaagTTGTACAAA
>TCONS_00029232
ATGACACAGCCTCAAAACCTGCAGTCCAGAACCCAACACGTTCATGCCACATGGGGCAAACGCTGCGACACCATCTTGTACATGACCTCGAAGAACACGGACTTCCCCACGATAGGGCTCAATGTGTCAGAAGGACGCAATCAACTCTACTGGAAGACCATACGAGCCTTCCAGTACATTCACAAGCACCATTTGGATGATGCTGATTGGTTCCTCAAAGCTGACGATGACACATTTGTTGTCATTGAGAATTTGCGCCATAGCTTGTCCAAACACAGCTCAGAGGATCCTCTGTATTTTGGACGTCGCTTCAGGCCCTTTGTTGCACAAGGCTACATGAGTGGAGGGGCCGGTTACGTCCTCAGTAAAGAAGCTTTGAGAAGATTTGTGAAGGGGTTTGCTGATGGACTTTGTACGCACACCACAGAACTTGAGGATGTTGGAATGGGACAATGcatggagaaaatgaaagttgAGATGGGGGATTCCAGGGATGTGTTTGGGAGACAAGTCTTTCACCCTTACCCTCCAGGCAATTACTTGGTGAGACAGCTACGCAGACAACGACCCTGGTACCTCATCTATGATCATTATACTCCAGTTGAGgGTCCGGGATGCTGCTCAGATTTTGCCATCTCATTCCATTACATAAACGCAGTGGAAATGCACACATTGGAGTACTACACATATCATTTACGCCCGTATGGATACAAATACAGATTCAATCCAGATGAACTGAAATGA

Function

GO:

id name namespace
GO:0016266 O-glycan processing biological_process
GO:0016267 O-glycan processing, core 1 biological_process
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-810 Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Predicted to act upstream of or within O-glycan processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000062278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029231 False 1054 mRNA 0.44 3 25512797 25519612
TCONS_00029232 True 744 mRNA 0.47 2 25512923 25519310

Neighbor

gene id symbol gene type direction distance location
XLOC_014811 umad1 coding downstream 48506 25435150 ~ 25464291 (-)
XLOC_014810 glcci1a coding downstream 85542 25352289 ~ 25427255 (-)
XLOC_014809 rims3 coding downstream 211086 25163540 ~ 25301711 (-)
XLOC_014808 CR855860.1 coding downstream 355606 25155542 ~ 25157191 (-)
XLOC_014807 ptp4a3a coding downstream 363199 25088150 ~ 25149598 (-)
XLOC_014814 asns coding upstream 137200 25656812 ~ 25678002 (-)
XLOC_014815 bloc1s4 coding upstream 159926 25679538 ~ 25693728 (-)
XLOC_014816 pard6gb coding upstream 179717 25699329 ~ 25772980 (-)
XLOC_014817 dtnbp1b coding upstream 642097 26161709 ~ 26235219 (-)
XLOC_014818 csnk2b coding upstream 1210686 26730298 ~ 26736346 (-)
XLOC_014711 CR382300.3 misc downstream 5784042 19728690 ~ 19728755 (-)
XLOC_014806 CU915256.2 non-coding downstream 426705 25084265 ~ 25086092 (-)
XLOC_014804 CU915256.1 non-coding downstream 451920 25056812 ~ 25060877 (-)
XLOC_014800 BX927310.2 non-coding downstream 755823 24756843 ~ 24756974 (-)
XLOC_014798 NA non-coding downstream 824618 24686710 ~ 24688179 (-)
XLOC_014820 NA non-coding upstream 1259934 26779546 ~ 26780698 (-)
XLOC_014821 NA non-coding upstream 1267288 26786900 ~ 26788280 (-)
XLOC_014822 NA non-coding upstream 1284257 26803869 ~ 26807219 (-)
XLOC_014824 FP085398.2 non-coding upstream 1308569 26828181 ~ 26837124 (-)
XLOC_014831 BX539323.1 non-coding upstream 1653102 27172714 ~ 27172830 (-)

Expression


Co-expression Network