XLOC_014815 (bloc1s4)


Basic Information

Item Value
gene id XLOC_014815
gene name bloc1s4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25679538 ~ 25693728 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029235
CTTTGACAGGGCGGCGGCGGTGCTTTCACCGCTCGAAGAGTCCAGCGCAGAGGTCAGCAGAGACAGCGGCATCGTGTCCCAGAGCGCCAGCAGCCTGTCTATGGTGAGCGAAGCCCTGAGCAGCGGCACCGTGTCCCAGAGCCCGAGCTTTGGCGCTGCGGTGGCCCAGAGTCCGAGCTCCGCAGCCGGAGAAAGCCAGGAGCAGAGCGAGCCCGAGCAGACACAAGACGACGAGCTGCTCAGACACACGGCACTCACATACTCCTCTTACATCAGAGCCAATGCTGAAGAAGAGGTCCTGTGCTTAGAGAAAAGCCTAGAGGAAATGCTAACAAGAGTTGACGAGTTTGTTGGTATGCTTGATATGatTCGAAATGACACCTCACAAGTGGTGAATGAAAACCTACCACAGATACAAAGAAAATCTGAAGAGATGAGGGAGATTTACCGAAAAATTGACAAATTGGAGGCCTTCGTCAAAATGGTTGGAGCCAATGTCAGCGCAATGGAGGAACAAGTAACTCAAGTTGAAGGTGAAGTTGGAACAATACCAGGAGCCTTCAAAAAGATCTTCCGCACAATGAACGTACCAGGTTTTTTAAATAAACCTGCAAGCCCAAGAAGGCAGTCACAAAGACATCCGGAGCTTCCCAGTGTATTTCGGACAGATGACTACTTTAAACCTCAGTCAGAGCAGTAAAGCAGAGACTTGATGAAGAGCGAGTCCGGGGTTCTCCAACATCAGCAGTGCTGCCTGCTTTCAGATGCAAACATTTCAGTCACTTTATCTGCTAATTATTCAAACGAATCCTGATCAACGACAAGTGTTATTTTAGTAGGCAGTCTAATGGCAGCTAGTTTTATAACCAACAAAAGCTTtggtttttgattttattttgttttcctgaaGTGCCTCTCCAGGAAGTCTGACACTGTTTCTTATAAATAGGAAAGCATGCTGAAAGAAAAACAAGTCAGAACATTAGTTAAAACGTTTATATGATTTTTATTCAAACTTGTACATAGTTTTACAGCTTTATAATTTTGTTGTCCTTTCTTCCAGTGCTTGAGATCTTTTTGCACTATTTTCACAGTTGCTATTTATCACTGATCGATCTTATTAAGGACTACAATTCAGTGTCCGGCACGTGTTGACAATTGATATTTCATGAACACACATGACCAGTGTAAATGACACTGGGTTATTATGTAGCATAAAGTGCCGCACTCTTCAGCCAAACAAACACCACAACAAATATTGTTTGTCATGGACCATTTACTTTTATACTTAAATGTCCATGGACGGTTGTGTTCTGCTAATTGTTAATGATGAGAATTGTGACTAATGATTGtctatttgtaataaatttacaGATGTAG

Function

symbol description
bloc1s4 Predicted to be part of BLOC-1 complex. Orthologous to human BLOC1S4 (biogenesis of lysosomal organelles complex 1 subunit 4).

GO:

id name namespace
GO:0031083 BLOC-1 complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040801-215 Predicted to be part of BLOC-1 complex. Orthologous to human BLOC1S4 (biogenesis of lysosomal organelles complex 1 subunit 4).

Ensembl:

ensembl_id ENSDARG00000007597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029235 True 1380 mRNA 0.43 5 25679538 25693728

Neighbor

gene id symbol gene type direction distance location
XLOC_014814 asns coding downstream 1536 25656812 ~ 25678002 (-)
XLOC_014812 si:dkey-202e17.1 coding downstream 159926 25512797 ~ 25519612 (-)
XLOC_014813 BX842688.1 coding downstream 160998 25518420 ~ 25518540 (-)
XLOC_014811 umad1 coding downstream 215247 25435150 ~ 25464291 (-)
XLOC_014810 glcci1a coding downstream 252283 25352289 ~ 25427255 (-)
XLOC_014816 pard6gb coding upstream 5601 25699329 ~ 25772980 (-)
XLOC_014817 dtnbp1b coding upstream 467981 26161709 ~ 26235219 (-)
XLOC_014818 csnk2b coding upstream 1036570 26730298 ~ 26736346 (-)
XLOC_014819 prrc2a coding upstream 1046085 26739813 ~ 26770083 (-)
XLOC_014820 NA coding upstream 1085818 26779546 ~ 26780698 (-)
XLOC_014711 CR382300.3 misc downstream 5950783 19728690 ~ 19728755 (-)
XLOC_014808 CR855860.1 non-coding downstream 522347 25155542 ~ 25157191 (-)
XLOC_014806 CU915256.2 non-coding downstream 593446 25084265 ~ 25086092 (-)
XLOC_014804 CU915256.1 non-coding downstream 618661 25056812 ~ 25060877 (-)
XLOC_014800 BX927310.2 non-coding downstream 922564 24756843 ~ 24756974 (-)
XLOC_014821 NA non-coding upstream 1093172 26786900 ~ 26788280 (-)
XLOC_014822 NA non-coding upstream 1110141 26803869 ~ 26807219 (-)
XLOC_014824 FP085398.2 non-coding upstream 1134453 26828181 ~ 26837124 (-)
XLOC_014831 BX539323.1 non-coding upstream 1478986 27172714 ~ 27172830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10797926_10802248 NA coding CI01000054 null 10797850 ~ 10802958 (+)