XLOC_014818 (csnk2b)


Basic Information

Item Value
gene id XLOC_014818
gene name csnk2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26730298 ~ 26736346 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029238
CTAACATCGACCCCGGGAGATCCTTGAGGTAACTTTCCCAACATGAGTAGCTCAGAGGAAGTGTCGTGGATTTCTTGGTTTTGTGGTCTACGGGGAAATGAATTCTTCTGTGAGGTGGATGAGGACTATATTCAGGACAAGTTTAATCTTACAGGACTCAACGAGCAAGTTCCCCATTACAGACAAGCTCTGGACATGATCCTCGATCTGGAACCTGATGAGGAGCTGGAGGATAACCCTAACCAGAGTGACCTGATTGAGCAGGCTGCTGAGATGCTCTATGGGCTGATTCATGCTCGCTATATCCTCACTAACCGTGGCATTGCCCAGATGCTGGAGAAATATCAGCAGGGAGACTTTGGCTACTGTCCTCGTGTTTACTGTGAGAATCAGCCAATGCTGCCTATTGGCCTCTCTGACATTCCCGGCGAGGCTATGGTGAAGCTCTACTGCCCCAAGTGTATGGATGTGTACACGCCGAAGTCATCCAGGCACCATCACACTGACGGAGCTTACTTTGGCACCGGCTTCCCTCACATGCTCTTTATGGTGCATCCCGAGTACCGGCCAAAAAGGCCTGCCAACCAGTTTGTGCCCAGGCTTTATGGTTTTAAGATTCACCCAATGGCTTACCAGCTCCAGCTGCAGGCAGCCTCCAGCTTCAAGAGTCCCGTCAAAGCCATCCGCTAAACACCTGGGATGGGATGGGATGGGGTGGGGTGGGATGTCGGGTGGGTTGTGTGTCCGTCAACAAGGGCTCACTCTTCTCCTTCGATTTGACCGAGACTAACATTTAAATGTGGAGAGAGTGAGACTGTAAAACACTGGGGAGAAACTAAAAGCTTACCTCTGAAACACTGTACAGAAAATGAGGTGTtccttgtaaaaaaaacaaacttcttTCAGTTCTCAACCTCCACATAGAAAATAAAGATCTACTTAAAGATAGATAACTGTAGGATGGCTCTGCTCGCTCTCTGGttactgtttgttttagtttgcTAATGCTAACATATAAAACAGTCTTGAATTGATGTCTTGTCAGTTCTCGGCATGGTGGATGGTTGGCTTTGAATGTAAAAGTAGGGTTGATTGGTCATCAAAACCCCATTTAAATTGGCTCAATCCCCTTCTCTGATATTTGGCTTATTGAAATAAAAAGGAAGGCTGTTGCATGATATATGCAGTATGTTTTGGGTTTAAGTGACGTCGCTGGGATTGTCTTTGACTGTTTTTTGTTGACAGACTGCAAGCTTTCACCGCATGCATAAGATAAGAGCAGAAATGGGAAGACAAGTGTAATCAGGAAACGCCATCTTAATTcgacatgtttttgttttaatatttggtACTGCACTCTTCTTCAGATTGACGCCAACCTGCTGCGTTCCTCCAGTGTCCAGATTCTTCAGACAAATTTGATTAGATTGACCAGAGTTaggatgttttttatgtttggtATGGGCCCAGGTTTTTCTTCTCTTGTTTAAAGTATTTCTTCTGGTAGAGAAGAGTCAGAGTAGAAAATATAAAATGGgtttaaatgcatttcttttgTGTGTGCTATTTCTTTTCTTTGATCctgttgaatgttttttttcctttacagCTATTGAGGAACCAGGGTTCAGAATTCACAATAAATGTCTTTTCCTACAA
>TCONS_00029239
GTCGCTGCGGCTAACATCGACCCCGGGAGATCCTTGAGGTAACATGAGTAGCTCAGAGGAAGTGTCGTGGATTTCTTGGTTTTGTGGTCTACGGGGAAATGAATTCTTCTGTGAGGTGGATGAGGACTATATTCAGGACAAGTTTAATCTTACAGGACTCAACGAGCAAGTTCCCCATTACAGACAAGCTCTGGACATGATCCTCGATCTGGAACCTGGTCAGTCATTTAGTTTTTCTACACAATCCCACTTTTGTGCCATCATTATGGTCagcatttcttttaaataattcaaCCTTAAGCTTTAATTAAACGCATTAACGGCCCAACCTGTCACTTACATGAGACTAGCCAATAGCTAAACCAGCATTCAGTCAATTGCCAATGGATGACGTCAAGTCCTGCCAAATATTTCTTGTTCTTGTTGGAAAGCAGTGTCATGTGAATAGTGAGATGATTCTTGTGTTCATCAGATGAGGAGCTGGAGGATAACCCTAACCAGAGTGACCTGATTGAGCAGGCTGCTGAGATGCTCTATGGGCTGATTCATGCTCGCTATATCCTCACTAACCGTGGCATTGCCCAGATGCTGGAGAAATATCAGCAGGGAGACTTTGGCTACTGTCCTCGTGTTTACTGTGAGAATCAGCCAATGCTGCCTATTGGCCTCTCTGACATTCCCGGCGAGGCTATGGTGAAGCTCTACTGCCCCAAGTGTATGGATGTGTACACGCCGAAGTCATCCAGGCACCATCACACTGACGGAGCTTACTTTGGCACCGGCTTCCCTCACATGCTCTTTATGGTGCATCCCGAGTACCGGCCAAAAAGGCCTGCCAACCAGTTTGTGCCCAGGCTTTATGGTTTTAAGATTCACCCAATGGCTTACCAGCTCCAGCTGCAGGCAGCCTCCAGCTTCAAGAGTCCCGTCAAAGCCATCCGCTAAACACCTGGGATGGGATGGGATGGGGTGGGGTGGGATGTCGGGTGGGTTGTGTGTCCGTCAACAAGGGCTCACTCTTCTCCTTCGATTTGACCGAGACTAACATTTAAATGTGGAGAGAGTGAGACTGTAAAACACTGGGGAGAAACTAAAAGCTTACCTCTGAAACACTGTACAGAAAATGAGGTGTtccttgtaaaaaaaacaaacttcttTCAGTTCTCAACCTCCACATAGAAAATAAAGATCTACTTAAAGATAGATAACTGTAGGATGGCTCTGCTCGCTCTCTGGttactgtttgttttagtttgcTAATGCTAACATATAAAACAGTCTTGAATTGATGTCTTGTCAGTTCTCGGCATGGTGGATGGTTGGCTTTGAATGTAAAAGTAGGGTTGATTGGTCATCAAAACCCCATTTAAATTGGCTCAATCCCCTTCTCTGATATTTGGCTTATTGAAATAAAAAGGAAGGCTGTTGCATGATATATGCAGTATGTTTTGGGTTTAAGTGACGTCGCTGGGATTGTCTTTGACTGTTTTTTGTTGACAGACTGCAAGCTTTCACCGCATGCATAAGATAAGAGCAGAAATGGGAAGACAAGTGTAATCAGGAAACGCCATCTTAATTcgacatgtttttgttttaatatttggtACTGCACTCTTCTTCAGATTGACGCCAACCTGCTGCGTTCCTCCAGTGTCCAGATTCTTCAGACAAATTTGATTAGATTGACCAGAGTTaggatgttttttatgtttggtATGGGCCCAGGTTTTTCTTCTCTTGTTTAAAGTATTTCTTCTGGTAGAGAAGAGTCAGAGTAGAAAATATAAAATGGgtttaaatgcatttcttttgTGTGTGCTATTTCTTTTCTTTGATCctgttgaatgttttttttcctttacagCTATTGAGGAACCAGGGTTCAGAATTCACAATAAATGTCTTTTCCTACAA
>TCONS_00029240
CTAACATCGACCCCGGGAGATCCTTGAGTTTCCCAACATGAGTAGCTCAGAGGAAGTGTCGTGGATTTCTTGGTTTTGTGGTCTACGGGGAAATGAATTCTTCTGTGAGGTGGATGAGGACTATATTCAGGACAAGTTTAATCTTACAGGACTCAACGAGCAAGTTCCCCATTACAGACAAGCTCTGGACATGATCCTCGATCTGGAACCTGATGAGGAGCTGGAGGATAACCCTAACCAGAGTGACCTGATTGAGCAGGCTGCTGAGATGCTCTATGGGCTGATTCATGCTCGCTATATCCTCACTAACCGTGGCATTGCCCAGATGCTGGAGAAATATCAGCAGGGAGACTTTGGCTACTGTCCTCGTGTTTACTGTGAGAATCAGCCAATGCTGCCTATTGGCCTCTCTGACATTCCCGGCGAGGCTATGGTGAAGCTCTACTGCCCCAAGTGTATGGATGTGTACACGCCGAAGTCATCCAGGCACCATCACACTGACGGAGCTTACTTTGGCACCGGCTTCCCTCACATGCTCTTTATGGTGCATCCCGAGTACCGGCCAAAAAGGCCTGCCAACCAGTTTGTGCCCAGGCTTTATGGTTTTAAGATTCACCCAATGGCTTACCAGCTCCAGCTGCAGGCAGCCTCCAGCTTCAAGAGTCCCGTCAAAGCCATCCGCTAAACACCTGGGATGGGATGGGATGGGGTGGGGTGGGATGTCGGGTGGGTTGTGTGTCCGTCAACAAGGGCTCACTCTTCTCCTTCGATTTGACCGAGACTAACATTTAAATGTGGAGAGAGTGAGACTGTAAAACACTGGGGAGAAACTAAAAGCTTACCTCTGAAACACTGTACAGAAAATGAGGTGTtccttgtaaaaaaaacaaacttcttTCAGTTCTCAACCTCCACATAGAAAATAAAGATCTACTTAAAGATAGATAACTGTAGGATGGCTCTGCTCGCTCTCTGG
>TCONS_00029241
GCTGCGGCTAACATCGACCCCGGGAGATCCTTGAGGTAACTTTCCCAACATGAGTAGCTCAGAGGAAGTGTCGTGGATTTCTTGGTTTTGTGGTCTACGGGGAAATGAATTCTTCTGTGAGGTGGATGAGGACTATATTCAGGACAAGTTTAATCTTACAGGACTCAACGAGCAAGTTCCCCATTACAGACAAGCTCTGGACATGATCCTCGATCTGGAACCTGATGAGGAGCTGGAGGATAACCCTAACCAGAGTGACCTGATTGAGCAGGCTGCTGAGATGCTCTATGGGCTGATTCATGCTCGCTATATCCTCACTAACCGTGGCATTGCCCAGATGCTGGAGAAATATCAGCAGGGAGACTTTGGCTACTGTCCTCGTGTTTACTGTGAGAATCAGCCAATGCTGCCTATTGGTGAGTGCCTCAGCCTGTTTTGTGCATGTTATTTTACCAACCCAGTTTTCATGTAGTAGAAAAATGTATAAGGTAAAAGTATTTGCAGTAGTTGCATATTGACATACAATTATTTAGTTGATTAAATATAACCATTTAAACgacacattaatattaataaaaataataaagaatatgTATCATTTGATTGAGCACTGTAGGCTCTGTCTTTAAAAGTTTTATGTAGGTCTATccttatatacagttaaaaacaagtcatattttaaaatattggcaCAAAAATCTGTacttgtttttaatttgtcatttatttatttattttaaatgtattttttatttaaaaataaatgtt

Function

symbol description
csnk2b Predicted to enable protein kinase regulator activity. Predicted to be involved in regulation of protein serine/threonine phosphatase activity. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytoplasm. Orthologous to human CSNK2B (casein kinase 2 beta).

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005956 protein kinase CK2 complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko04310 Wnt signaling pathway
ko04064 NF-kappa B signaling pathway
ko04137 Mitophagy - animal
ko04139 Mitophagy - yeast
ko04520 Adherens junction
ko04712 Circadian rhythm - plant
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05162 Measles
ko05010 Alzheimer disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03009 Ribosome biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-990415-29 Predicted to enable protein kinase regulator activity. Predicted to be involved in regulation of protein serine/threonine phosphatase activity. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytoplasm. Orthologous to human CSNK2B (casein kinase 2 beta).

Ensembl:

ensembl_id ENSDARG00000077776

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029238 False 1659 mRNA 0.44 7 26730298 26736336
TCONS_00029239 False 1914 lncRNA 0.43 6 26730298 26736346
TCONS_00029240 False 976 mRNA 0.49 7 26730976 26736336
TCONS_00029241 True 768 lncRNA 0.38 5 26732122 26736343

Neighbor

gene id symbol gene type direction distance location
XLOC_014817 dtnbp1b coding downstream 495079 26161709 ~ 26235219 (-)
XLOC_014816 pard6gb coding downstream 957318 25699329 ~ 25772980 (-)
XLOC_014815 bloc1s4 coding downstream 1036570 25679538 ~ 25693728 (-)
XLOC_014814 asns coding downstream 1052296 25656812 ~ 25678002 (-)
XLOC_014812 si:dkey-202e17.1 coding downstream 1210686 25512797 ~ 25519612 (-)
XLOC_014819 prrc2a coding upstream 3467 26739813 ~ 26770083 (-)
XLOC_014820 NA coding upstream 43200 26779546 ~ 26780698 (-)
XLOC_014821 NA coding upstream 50554 26786900 ~ 26788280 (-)
XLOC_014822 NA coding upstream 67523 26803869 ~ 26807219 (-)
XLOC_014823 neu1 coding upstream 73862 26810208 ~ 26823709 (-)
XLOC_014711 CR382300.3 misc downstream 7001543 19728690 ~ 19728755 (-)
XLOC_014813 BX842688.1 non-coding downstream 1211758 25518420 ~ 25518540 (-)
XLOC_014808 CR855860.1 non-coding downstream 1573107 25155542 ~ 25157191 (-)
XLOC_014806 CU915256.2 non-coding downstream 1644206 25084265 ~ 25086092 (-)
XLOC_014804 CU915256.1 non-coding downstream 1669421 25056812 ~ 25060877 (-)
XLOC_014800 BX927310.2 non-coding downstream 1973324 24756843 ~ 24756974 (-)
XLOC_014824 FP085398.2 non-coding upstream 91835 26828181 ~ 26837124 (-)
XLOC_014831 BX539323.1 non-coding upstream 436368 27172714 ~ 27172830 (-)

Expression


Co-expression Network