XLOC_014820


Basic Information

Item Value
gene id XLOC_014820
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26779546 ~ 26780698 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029778
atctgctgtccagaatcagctggtttgtcttagtcgggcatctcagctgagacctgtccactatgggtgaccctgccGGTATCTGAAGTACCAGTGgtgaagctctcagcatcactgatgcacacaagccctcacagcacgtcaagctgcaaaccacgtgagggaccctaacctaacctaccctaacTTAACAGACACTGCAAATCACTAAACGCATCGAAACACCCTGAAGAGTCCAGCGACCGACCCGCAACACGAGAACAACCGATCAGAAAACCCTGATAAACGTGCAGAAAACCACATGAAACAACCTGATGACCACACAGCAAAGCATTAAAAACCATGAGCAAACCCACTGACAATCACCAAACACAGCCGACTGATGAAGCAAGAGCAGCGGCTCTTCACTGATGTCTACCTGGATTCGAGGAGCGATGCTGGATCCAGATCTGCTCTCTGTGATGACTATTCGTCCATCAGCCTGCTCCGTCTCCTCCACTACAGGACACCCGAGtgcctcccacagccgctgcttgatgTCCAGGCCCAGCTGCAGGCTGTAGGGACGGCGGTGACCACATCGGTTCTTCCTCATGGGCTCAACCACAGAGCGGTAGATGTCCTGATAGTCCTCAACACTGCAGCCATGGATGGAGAGAGACTCTGTCTGCTGACCTGCATCCTCTGAAGACACTGTGACTGCTGGACGGAGGTCAGGAAGGACAGCCGCGTTCTTCACGTGTCGCTCCTCCAAACCTGAAACAGAGACACGGCTGTAAGTGTGATCTAACCTGACCACAGCTGCAGGATCCAGAGCAGAAGAGGCACCCTCCACCAAGAAGTCTCTCAGGCGTGCAGGAAGAGCCCTGGTTCTTCTGAGGCGTCGCTGCTCCATGAAGATCAACTTCTCAAATCAGACAAACTGATGAAACTTGTCAAACTGGAGAGTTTAAAGAGCTTCAAGCAGAGGATTCAAGACTTTCAGACACTTGTGTGGATTTAAAGTGTAAACTCCagttgccgtggtg

Function

GO:

id name namespace
GO:0003690 double-stranded DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029778 True 1028 lncRNA 0.52 2 26779546 26780698

Neighbor

gene id symbol gene type direction distance location
XLOC_014819 prrc2a coding downstream 9463 26739813 ~ 26770083 (-)
XLOC_014818 csnk2b coding downstream 43200 26730298 ~ 26736346 (-)
XLOC_014817 dtnbp1b coding downstream 544327 26161709 ~ 26235219 (-)
XLOC_014816 pard6gb coding downstream 1006566 25699329 ~ 25772980 (-)
XLOC_014815 bloc1s4 coding downstream 1085818 25679538 ~ 25693728 (-)
XLOC_014821 NA coding upstream 6202 26786900 ~ 26788280 (-)
XLOC_014822 NA coding upstream 23171 26803869 ~ 26807219 (-)
XLOC_014823 neu1 coding upstream 29510 26810208 ~ 26823709 (-)
XLOC_014824 FP085398.2 coding upstream 47483 26828181 ~ 26837124 (-)
XLOC_014825 prrt1 coding upstream 77341 26858039 ~ 26869103 (-)
XLOC_014711 CR382300.3 misc downstream 7050791 19728690 ~ 19728755 (-)
XLOC_014813 BX842688.1 non-coding downstream 1261006 25518420 ~ 25518540 (-)
XLOC_014808 CR855860.1 non-coding downstream 1622355 25155542 ~ 25157191 (-)
XLOC_014806 CU915256.2 non-coding downstream 1693454 25084265 ~ 25086092 (-)
XLOC_014804 CU915256.1 non-coding downstream 1718669 25056812 ~ 25060877 (-)
XLOC_014800 BX927310.2 non-coding downstream 2022572 24756843 ~ 24756974 (-)
XLOC_014831 BX539323.1 non-coding upstream 392016 27172714 ~ 27172830 (-)
XLOC_014835 NA non-coding upstream 672854 27453552 ~ 27463611 (-)

Expression


Co-expression Network