XLOC_014821


Basic Information

Item Value
gene id XLOC_014821
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26786900 ~ 26788280 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029779
CTTGAGTCTGTGATCTTCTGAAACTCTGCAGAATCTaatctgctgtccagaatcagctggtttgtcttagtcgggcatctcagctgagacctgtccactatgggtgaccctgccGGTATCTGAAGTACCAGTGgtgaagctctcagcatcactgatgcacacaagccctcacagcacgtcaagctgcaaaccacgtgagggaccctaacctaacctaccctaacTTAACAGACACGGCAAATCACTAAACGCATCGAAACACCCTGAAGAGTCCAGCGACCGACCCGCAACACGAGAACAACCGATCAGAAAACCCTGATAAACGTGCAGAAAACCACATGAAACAACCTGATGACCACACAGCAAAGCATTAAAAACCATGAGCAAACCCACTGACAATCACCAAACACAGCCGACTGATGAAGCAAGAGTGTGTGAAAAAGGAAACTTACTTGCAGCGGCTCTTCACTGATGTCTACCTGGATTCGAGGAGCGATGCTGGATCCAGATCTGCTCTCTGTGATGACTATTCGTCCATCAGCCTGCTCCGTCTCCTCCACTACAGGACACCCGAGtgcctcccacagccgctgcttgatgTCCAGGCCCAGCTGCAGGCTGTAGGGACGGCGGTGACCACATCGGTTCTTCCTCATGGGCTCAACCACAGAGCGGTAGATGTCCTGATAGTCCTCAACACTGCAGCCATGGATGGAGAGAGACTCTGTCTGCTGACCTGCATCCTCTGAAGACACTGTGACTGCTGGACGGAGGTCAGGAAGGACAGCCGCGTTCTTCACGTGTCGCTCCTCCAAACCTGAAACAGAGACACGGCTGTAAGTGTGATCTAACCTGACCACAGCTGCAGGATCCAGAGCAGAAGAGGCACCCTCCACCAAGAAGTCTCTCAGGCGTGCAGGAAGAGCCCTGGTTCTTCTGAGGCGTCGCTGCTCCATGAAGATCAACTTCTCAAATCAGACAAACTGATGAAACTTGTCAAACTGGAGAGTTTAAAGAGCTTCAAGCAGAGGATTCAAGACTTTCAGACACTTGTGTGGATTTAAAGTGTAAACTCCagttgccgtggtgacagaatattgaACTGGTTTAAATGTAAACACTTGATCAGCAGTAAGTCAATCTGAACACGAGAAAAGTTCTTCTCTGTTACCAGttttgtaattttacagtaaatttaagtaaatattgTGTGAACTGAACAAAATTGGTaatacagaaacagacaaacactttgatttaaatacaatttaaatcatTTA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0042246 tissue regeneration biological_process
GO:0031099 regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029779 True 1280 lncRNA 0.48 2 26786900 26788280

Neighbor

gene id symbol gene type direction distance location
XLOC_014820 NA coding downstream 6202 26779546 ~ 26780698 (-)
XLOC_014819 prrc2a coding downstream 16817 26739813 ~ 26770083 (-)
XLOC_014818 csnk2b coding downstream 50554 26730298 ~ 26736346 (-)
XLOC_014817 dtnbp1b coding downstream 551681 26161709 ~ 26235219 (-)
XLOC_014816 pard6gb coding downstream 1013920 25699329 ~ 25772980 (-)
XLOC_014822 NA coding upstream 15589 26803869 ~ 26807219 (-)
XLOC_014823 neu1 coding upstream 21928 26810208 ~ 26823709 (-)
XLOC_014824 FP085398.2 coding upstream 39901 26828181 ~ 26837124 (-)
XLOC_014825 prrt1 coding upstream 69759 26858039 ~ 26869103 (-)
XLOC_014826 skiv2l coding upstream 81148 26869428 ~ 26923957 (-)
XLOC_014711 CR382300.3 misc downstream 7058145 19728690 ~ 19728755 (-)
XLOC_014813 BX842688.1 non-coding downstream 1268360 25518420 ~ 25518540 (-)
XLOC_014808 CR855860.1 non-coding downstream 1629709 25155542 ~ 25157191 (-)
XLOC_014806 CU915256.2 non-coding downstream 1700808 25084265 ~ 25086092 (-)
XLOC_014804 CU915256.1 non-coding downstream 1726023 25056812 ~ 25060877 (-)
XLOC_014831 BX539323.1 non-coding upstream 384434 27172714 ~ 27172830 (-)
XLOC_014835 NA non-coding upstream 665272 27453552 ~ 27463611 (-)
XLOC_014836 NA non-coding upstream 675650 27463930 ~ 27470389 (-)

Expression


Co-expression Network