XLOC_014823 (neu1)


Basic Information

Item Value
gene id XLOC_014823
gene name neu1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26810208 ~ 26823709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029247
AGATAAAGGagacaaataatttatttaggaaGAGACTGCCCCTTCTCTTCATCTGGTTTATCGTTGCAATGGATTTTATTCGACAAATTGGAATTTTACTCGGGATTGCGGTGCTTTCCAGCGCGCGTGCCGACAAGACTCAGATTGATCCGCTGATATACGAGGAACAGTTACTATGGGTCAGTGGTGGAGCCGGTCAGGTCAACGCTTACAGGATTCCTCTGCTAACGTTTACATTGCGTGGAAGCCTGCTGGCGTTCTCTGAGGCCAGGAAAATGTCTTCTAGTGACATTGGGGCAAAGTTCATTGCTCTGAGACGCTCCACAGACAGAGGTGCCACCTGGTCTCCCACCTCGTTCATAGTGGACGATGGTTCTCTAGCCGATGGGTTGAGTCTGGGTTCAGTTGTAGTGGATGAGGAGACCGGCGCTGTGATCATCATCTACTCTCTGTGTTTTCACCAGTATCAGTGCAGCCCCTCCAGCACGATGATGGTGCAAAGTCTGGATGATGGCTTCACCTGGAGTGTTCCACGAAATCTCTCTATCGAGCTGGGGGTGAAGAGCTTTGCTCCTGGGCCTGGATTTGGAATACAGaaGCGGTATCCACCCAGTAAGGGCCGTTTGGTGGTGTGTGGCCATGGCACCATTGCTGGCGATGGGGTTTTCTGCATCTTGAGTGATGATCACGGTAGATCCTGGAGATATGGAGCTGCTCTGAAGAGTATCCCTTACAACCAGCCTAAACAAGACCTGGATTTCAACCCAGATGAGTGTCAGCCAGTGGAACTAGAGGATGGAAGCATTGTCATTAATGTACGCAACCAGAACAACTACCACTGCCGCTGTCGCATCATAGTGCGCAGTTTGGACGGAGGCGAGTCTCTGCCCGTTGAGGAGCTGGTGTTTGATAAAACACTGATCGACCCAGTTGTAGCAGCCGGAGCCTTGCAGAAACAAGGAGTGATGTACTTCACCAACCCCTCCAGCACACAACACAGGGTCAATCTAACTCTTCGCTGGTCTTTCACTGATGGGAAGTCATGGGAGAAGGAGGCCGTCCAGATCTGGGCGGGGCCAAGCGGTTACTCCACTATGACATCACTCAAAGGAGGTTCTGCTGAGGACAACAAATACATCTTCGTCGTTTATGAAAAGGGCCACAAAGATTACTGGGAGACCATCTCTTTTGCCAAAATCCATCTGTATGGAGGGAAATAGCACACCGATGGAGGAGCCGAGAAAAAGGGAAACTTAGGACTTCGAAAATTGACAGGTTTTTTGGAGAAAACCAAGCTATCATCCTGATCTGAAATCAGTTTTACAGTTCTTTAAATAAAATCGGGTCTGTACTATGCACTGCTTTTAAGATTCACTACGGAAAGAATCAAAATATCCTGAATCAGTGATTGAGATCTAGAgtcatttaatttataaaaacacaGCCATGATTGTGCCAACATTTTTACTCGTCTCACTCCAATGCACAAATCCTTCTGAAATAAAAGCAATTTGAACACGTTT
>TCONS_00029248
GACTCTTATAAGGATGTGAGTCCCCTGTGGTTGGGAATATGCTTAGCAAACGTTATTAAAGGAGATAAAGGagacaaataatttatttaggaaGAGACTGCCCCTTCTCTTCATCTGGTTTATCGTTGCAATGGATTTTATTCGACAAATTGGAATTTTACTCGGGATTGCGGTGCTTTCCAGCGCGCGTGCCGACAAGACTCAGATTGATCCGCTGATATACGAGGAACAGTTACTATGGGTCAGTGGTGGAGCCGGTCAGGTCAACGCTTACAGGATTCCTCTGCTAACGTTTACATTGCGTGGAAGCCTGCTGGCGTTCTCTGAGGCCAGGAAAATGTCTTCTAGTGACATTGGGGCAAAGTTCATTGCTCTGAGACGCTCCACAGACAGAGGTGCCACCTGGTCTCCCACCTCGTTCATAGTGGACGATGGTTCTCTAGCCGATGGGTTGAGTCTGGGTTCAGTTGTAGTGGATGAGGAGACCGGCGCTGTGATCATCATCTACTCTCTGTGTTTTCACCAGTATCAGTGCAGCCCCTCCAGCACGATGATGGTGCAAAGTCTGGATGATGGCTTCACCTGGAGTGTTCCACGAAATCTCTCTATCGAGCTGGGGGTGAAGAGCTTTGCTCCTGGGCCTGGATTTGGAATACAGGTGAGTAATTCCATGTCAACAAATTCCATGTTCAATGTCAACATTgccacg

Function

symbol description
neu1 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

GO:

id name namespace
GO:0009313 oligosaccharide catabolic process biological_process
GO:0006689 ganglioside catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko00511 Other glycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-060503-592 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

Ensembl:

ensembl_id ENSDARG00000008832

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029247 False 1523 mRNA 0.47 6 26810208 26823647
TCONS_00029248 True 709 lncRNA 0.48 3 26821666 26823709

Neighbor

gene id symbol gene type direction distance location
XLOC_014822 NA coding downstream 2989 26803869 ~ 26807219 (-)
XLOC_014821 NA coding downstream 21928 26786900 ~ 26788280 (-)
XLOC_014820 NA coding downstream 29510 26779546 ~ 26780698 (-)
XLOC_014819 prrc2a coding downstream 40125 26739813 ~ 26770083 (-)
XLOC_014818 csnk2b coding downstream 73862 26730298 ~ 26736346 (-)
XLOC_014824 FP085398.2 coding upstream 4472 26828181 ~ 26837124 (-)
XLOC_014825 prrt1 coding upstream 34330 26858039 ~ 26869103 (-)
XLOC_014826 skiv2l coding upstream 45719 26869428 ~ 26923957 (-)
XLOC_014827 zbtb12.1 coding upstream 113834 26937543 ~ 26943936 (-)
XLOC_014828 zbtb12.2 coding upstream 133716 26957425 ~ 26964348 (-)
XLOC_014711 CR382300.3 misc downstream 7081453 19728690 ~ 19728755 (-)
XLOC_014813 BX842688.1 non-coding downstream 1291668 25518420 ~ 25518540 (-)
XLOC_014808 CR855860.1 non-coding downstream 1653017 25155542 ~ 25157191 (-)
XLOC_014831 BX539323.1 non-coding upstream 349005 27172714 ~ 27172830 (-)
XLOC_014835 NA non-coding upstream 629843 27453552 ~ 27463611 (-)
XLOC_014836 NA non-coding upstream 640221 27463930 ~ 27470389 (-)
XLOC_014839 NA non-coding upstream 747997 27571706 ~ 27575094 (-)

Expression


Co-expression Network