XLOC_014827 (zbtb12.1)


Basic Information

Item Value
gene id XLOC_014827
gene name zbtb12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26937543 ~ 26943936 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029255
cttCCAGTGCTAAGATCATGGATGTGGAAGTGGTGAGTTTCCGTTTGCCTGGACATGGAGAAACCACTCTAAATAACATGAACTCCCTGCGATCGCAGCAGCACTTCTGTGATGTCACCATTGTTGCAGGCGGCAGACGCATGTTCAGGGGTCATAAGGTTGTGTTGGCGGCTTGCTCTGTGTTTCTCAGAGACCAGTTTCTCATGAACCCAACTTCAGAGCTACAGGTGTCGATGTTGCACAGCTCAGCAGTGGTATGTGAACTCCTCCAGTCCTGTTATACAGGGATACTGCAGTTCAGCGCCAAAGAGATTGTGAACTACATGACCGCGGCCAGCTACTTGCAGATGGAGCATGTGGTGGAGAAATGCAGAGGGGCCCTGAGCCAGTACATGCAGCCCCAGAGCTGCTCCCCGGTCTTGACGTCAAACAAGTCTGTACAGACTGTGAAATCAGATGATTCTGAATCTATGCCAGTGATTGTCAGTGTACGAGGATCAGATTCATCCAGCCTCTTCGAGACAGAGGATGGATATGGGAGTGATGTCTATCAGGTCATAATTGATGAACCAGAGAAGACCCCTGATGCTGAAGAGGAAAACCGAGAAACTGCATCAGAAGACCTCTGTCAGTTGGACATGGGCATAGAGGAGCCTAATATGGAGGTTCAAGCTAAATACGATGACCTCCATGGGGAACAACAGTACAGTGAGCGCAAGGGAATTAAAGGAAGAGGGTTAAAACGCAGGAAGAGATACGTATTTAAGAAGGACCGCACATCCTTAGGGAATTATCAGGATAACTGGTGCTTTCAGACAGCAGAAGAGATCATGGGTAAGTCAGAAACAGATTTTCAGGCTGATTATCAGTCCAATCAGCGTCTCACAGACTGTTCTGTTCACACCGAGTACAAAAATGAAGGAGGACCAGGAGAAGATATAGGCTCTGATGGAGGTCCTGCACACTTCCGTATTGAAGCTTCAAGCGGAGAAGAAGAATTGGGAATCGGAACACCTTCCAATGAGCGCGGAGCTACAGATGAATCTGTGGTGGGTTCCACATCCAATGTAACCGGGCCAGTAGTGTGTGAGCAGTGTGGATTGGCATTTTCCTCTACGCAGGACTTGGCGATGCATTCCTTATCAGCACACCAGCAGTATATTTGTCCGTGCTGTAGGAAGCAGTTCAGCAACTCCAGGAATCTCAACCGCCACATGCTCCTCCATCGAGATAATTCCAGGCTCCCCTCCTGCCCCCTGTGCCACAAGACCTTCACTCAGAAGTCAACAATGTACGACCACATGAACGTGCACAGCGGGGAGCGCCCGTACGTGTGCGCATACTGCCCTATCAGCTTTGCACACAGGTCTGCTCTGCGCCGCCACCTGTTGGAGCAACATGGAAAAACCATGCCCCAAAACCACCAGGAAATGCAGCGAAATAAGCATAGCATTGGAGAAGGagtttag

Function

symbol description
zbtb12.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB12 (zinc finger and BTB domain containing 12).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-875 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB12 (zinc finger and BTB domain containing 12).

Ensembl:

ensembl_id ENSDARG00000103949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029255 True 1469 mRNA 0.50 3 26937543 26943936

Neighbor

gene id symbol gene type direction distance location
XLOC_014826 skiv2l coding downstream 13586 26869428 ~ 26923957 (-)
XLOC_014825 prrt1 coding downstream 68440 26858039 ~ 26869103 (-)
XLOC_014824 FP085398.2 coding downstream 100419 26828181 ~ 26837124 (-)
XLOC_014823 neu1 coding downstream 113834 26810208 ~ 26823709 (-)
XLOC_014822 NA coding downstream 130324 26803869 ~ 26807219 (-)
XLOC_014828 zbtb12.2 coding upstream 13489 26957425 ~ 26964348 (-)
XLOC_014829 sacm1la coding upstream 23421 26967357 ~ 27006764 (-)
XLOC_014830 gabbr1b coding upstream 96597 27040533 ~ 27261102 (-)
XLOC_014831 BX539323.1 coding upstream 228778 27172714 ~ 27172830 (-)
XLOC_014832 gtf2h4 coding upstream 339136 27283072 ~ 27339872 (-)
XLOC_014711 CR382300.3 misc downstream 7208788 19728690 ~ 19728755 (-)
XLOC_014821 NA non-coding downstream 149263 26786900 ~ 26788280 (-)
XLOC_014820 NA non-coding downstream 156845 26779546 ~ 26780698 (-)
XLOC_014813 BX842688.1 non-coding downstream 1419003 25518420 ~ 25518540 (-)
XLOC_014835 NA non-coding upstream 509616 27453552 ~ 27463611 (-)
XLOC_014836 NA non-coding upstream 519994 27463930 ~ 27470389 (-)
XLOC_014839 NA non-coding upstream 627770 27571706 ~ 27575094 (-)
XLOC_014841 BX548075.1 non-coding upstream 637814 27581750 ~ 27584737 (-)

Expression


Co-expression Network