XLOC_014828 (zbtb12.2)


Basic Information

Item Value
gene id XLOC_014828
gene name zbtb12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26957425 ~ 26964348 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029256
aaaatcatCTCTCGGTTTGGAAATCTCCTGTGAAGTTTTCCGACTTCATTTCATTCTGCGTGTTTTactgtaattgttttaaaaacactgggAACACATTATAAATATGTAGTAGGTATGACCGAAAGCAGACCCACAAAGAGAAAAGACTTCTGTACGGTTAAACGAGATCAGCTCGATAGTTTTAGTTTCACGTTTTCGCTCCAGCAGTGATGTGGACGGAGCTGAATTGATCTCCAGACATCATAACGTGTCTGTGTACTGTACCATTTTTGATATCTTCTCTCGAAATCAATCAACTTCCAGTGCTAAGATCATGGATGTGGAAGTGGTGAGTTTCCGTTTGCCTGGACATGGAGACACCACCCTAAATAACATGAATTCCCTGCGGTCGCAGCAGCACTTCTGTGATGTCACCATTATGGCGGGGGGCAGACGCATGTTTAGGGGTCACAAGGTTGTGTTGGCGGCTTGCTCTGCATTTCTCAGGGACCAGTTTCTCCTGAACCCCTCTTCAGAGCTACAGCAGGTTTCAATGTTGCACAGCTCAACAGTGGTATTTGAACTCCTCCAGTCCTGTTATACAGGGATACTGCAGTTCAGCGCCAAAGAGATTGTGAACTACTTGACTGCTGCCAGCTACCTGCAGATGGAGCATGTGGTGGAGAAATGCAGAGGAGCACTGAGCCAGTACATGCAGCCCCGGAGTCGCAGTCCCATTACTGTGAAGTCAGAAGACCCTCAGTCTATGCCGGTGATTGTCAGTGGAAGTTCCCATTCATTGGGGTCTATTTCATCACCTTCTGATACTGCTTCACTGCATCCTCACAGTTCAGGAAAGGAGCTCCAGGGTTGCGATGCTGAACTTTCCAACATCCATCACAAAGATGACAGTGATTTGGTCTTACATCATGTTAGAGAATCAAATGCATCTGGCCACTTAGAGGGAGACGATCTGCAGGACAGCGACATCTTTCAGGTGCACATCGACGATGATCATCAAGACCCAGAAAAGATTACTGGTGGTGAGGAGGAAGACAGACATGCAGTTGTTGTGTTAGACGACCACTGTCAGCTAGACATGGGGGTAGAGGATTCCATCATGGAAGGGCGAGCTAAAGGTGGTGGCTTCCGCGGTGCAGGTCGTATATGGAGACGGAGGCACGGAGAGCACAGGGGAGGCAGAGGAAGAGGCTTCAAACACAGGAAGCGATACACATTAAAGGACCGCAAGCTCTTGGGTAACTATCAGGAGGCTTGGCGCTTTCCAACCCCGGATGAGATCATGGGTAGCTTCGGGGCTGACTTTGGGGCTGATTACTTGTCCAATCAGCATCTCGCAGATGGCTCTGTCCGCGTTGAGTACAGAGCTGGAGAAGAACAAGGAGGAGAGATTGGCCCTGATGGAGGTCCAGCACACTTTGGTGTGGAAGCTTCTGCTGGGGCTGAGGGAATGGGAGTAGGAGCACCTTCGAATCAACGTGGAGCTGCTGACGAGTCGGTGGCAGTGGTGGGATCCACGTCCTGCGTAACAGGACCAGTAGTGTGTGAGCAGTGTGGACTAGCATTTTCCACAACGCAGGACTTAGCGATGCATTCCCTGTCGACGCATAGGCTGTACGTGTGTCCATGCTGCGGGAAGCACTTCAGCCACTCCAGTAACCTCAACCGCCACATGATTGTCCACCGCGGGGTGTCCAAACTTCACTCCTGCCCCCTGTGCCACAAGACCTTCACTCAGAAGTCAACACTGTGCGACCACATGAACCTGCACAGCGGGGAGCGCCCACACGTTTGTGCATACTGCCATGTCAGCTTTGCCCACAAGCCTGCTCTGCGGCGCCACCTGAAGGAGCAGCACGGAAGGACCACTGCCCAAAACTACCTGGAGATGCAGCGAAACAATGAGAGTGGAGCTGGGGGAGGAGTTTAGATCGTCAGAGTGGGTTGTTACAATAAAATCTGAATTTACCTTTATTTACCTTCTCAATACACATGTGTAGGCTTAAGGCCAGTTTAAacttctgtgtcgagtttatGTGGGACGTCTGGCATAACTTTTGCACAGTCGTGTACCTTAACACAGACCCTGGCACACACCtcccaaaaaatgtaactacgtGTCGTCACAAAGCAGAGTACAATATTTGTGATTGGCCAACTTGGTAGAGGGTAGGGCCTAGGGAGCGGAGCAAAGCTGATAGCGGAGGTTGTTGAACAAGTCTTAACTAtgtgttcacaccgaaagcggtgaAAGTGTCAAAGGCGCCGGAAGTCATAA

Function

symbol description
zbtb12.2 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZBTB12 (zinc finger and BTB domain containing 12).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-27 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZBTB12 (zinc finger and BTB domain containing 12).

Ensembl:

ensembl_id ENSDARG00000070658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029256 True 2281 mRNA 0.50 5 26957425 26964348

Neighbor

gene id symbol gene type direction distance location
XLOC_014827 zbtb12.1 coding downstream 13489 26937543 ~ 26943936 (-)
XLOC_014826 skiv2l coding downstream 33468 26869428 ~ 26923957 (-)
XLOC_014825 prrt1 coding downstream 88322 26858039 ~ 26869103 (-)
XLOC_014824 FP085398.2 coding downstream 120301 26828181 ~ 26837124 (-)
XLOC_014823 neu1 coding downstream 133716 26810208 ~ 26823709 (-)
XLOC_014829 sacm1la coding upstream 3009 26967357 ~ 27006764 (-)
XLOC_014830 gabbr1b coding upstream 76185 27040533 ~ 27261102 (-)
XLOC_014831 BX539323.1 coding upstream 208366 27172714 ~ 27172830 (-)
XLOC_014832 gtf2h4 coding upstream 318724 27283072 ~ 27339872 (-)
XLOC_014833 mgat1b coding upstream 402584 27366932 ~ 27395531 (-)
XLOC_014711 CR382300.3 misc downstream 7228670 19728690 ~ 19728755 (-)
XLOC_014822 NA non-coding downstream 150206 26803869 ~ 26807219 (-)
XLOC_014821 NA non-coding downstream 169145 26786900 ~ 26788280 (-)
XLOC_014820 NA non-coding downstream 176727 26779546 ~ 26780698 (-)
XLOC_014813 BX842688.1 non-coding downstream 1438885 25518420 ~ 25518540 (-)
XLOC_014835 NA non-coding upstream 489204 27453552 ~ 27463611 (-)
XLOC_014836 NA non-coding upstream 499582 27463930 ~ 27470389 (-)
XLOC_014839 NA non-coding upstream 607358 27571706 ~ 27575094 (-)
XLOC_014841 BX548075.1 non-coding upstream 617402 27581750 ~ 27584737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10114035_10120718 ZBTB12.2 coding CI01000054 null 10113730 ~ 10121787 (+)