XLOC_014829 (sacm1la)


Basic Information

Item Value
gene id XLOC_014829
gene name sacm1la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26967357 ~ 27006764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029257
CGGAAGTGAAGATGGCGAACGCCTACGAGAGGTTCAATCTGCATTCCACACCTGAGAAGTTCTACATTGAGGCCTGTGATGATGGAGCTGATGACGTGTTGGTCATTGATAGGGTGTCCACCGAGATGACCCTTGCAGGTATTAAGGACATTCCACCATCAGGCATAACCAGGCCCATATGTGGAGTCATGGGAACTGTTCGCCTGGTAGCTGGGATGTACCTCATAGTCATCACCCGGAAGCGGAAAGTGGGCGACCTGTTTGGCCACACTGTGTGGAAAGCGGTGGAGTTTGATGTGATTTCTTATAAGAAGACCATTTTGCACCTCACAGATATTCAGATGCAAGACAACAAGACATTTCTGACTATGATTAACAATGTACTGAACACAGACGGCTTCTACTTTTGCACGGACTACGACCTGACCCACACCCAGCAGCGCCTGTCCAACACCAGCCCGGACTTTCAGGAGATGAGCCTGCTGGAGAGGGCGGACCAGAGGTTCATGTGGAACGGAAACCTTTTAAGAGAAATCATCGCACAGCCCGAGCTCCATAAATTTGCATTTCCTGTCATCCACGGATTTATTGTGATGAAGCCGTGTTGCATCAATGGGAAAGTGTTTGAGTGGATCATCATCTCTAGACGGAGCTGTTTCAGAGCAGGGGTGCGATATTATGTCAGAGGCATTGACTCAGAAGGACATGCTGCTAACTTCGTCGAGACAGAACAGATAGTCCAGTTCAATAATGCCAGGGCGTCCTTTGTCCAGACTCGAGGCTCCATACCATTCTTCTGGTCTCAGAGACCCAACCTGAAGTACAAGCCCAAGCCACTAATAAGCAAAGACACCAATCACATGGATGGGCTCAGGAGACATTTTGAGTCACAGGTTCTTATTTATGGCAAGCAAGTGATTCTAAATTTGGTGAATCAGAAAGGATCAGAGTTGCCTCTTGAACAGGCCTTTGCCAAAATGGTCAGCAGCATGGAGAATGGATTCATCAAGTACATAGCCTTTGATTTCCACAAAGAGTGCAGTAAGATGAGATGGCATCGCCTCCAGATTCTCGTTGATGCCGTATCTGACATGCAAGAGGAGTTTGGGTACTTCATGGTGAGCTCAGATGGGAAGGTGTTATCGGAGCAGTCTGGAACCTTCCGCAGTAACTGTATGGACTGCTTGGACCGCACTAACGTCATTCAGAGCCTGCTGGCCAGACGCTCCCTGCAGAGCCAGCTACAGAGGATGGGTGTCCTCCACGTTGGCCAGAAGATCGAGGAACAAGCTGATTTTGAGAAGATTTACAAAAAcgCTTGGGCAGACAATGCTAATGCCTGTGCTAAGCAGTACGCAGGAACAGGTGCCCTGAAAACCGACTTCACCAGGACTGGGAAGAGGACTCACTGGGGCTTGGTAATGGACGGCTGGAATTCAATGATCCGTTACTACAAGAACAATTTCTCCGATGGCTTCAGACAAGACTCCATCGATCTCTTCCTTGGGAACTATAGCGTGGATGAAACTGATAGTTTGACGCCTCTGCACGTTAAGAAGGACTGGAAGTTTCTTTTGCTTCCTGTTATTATGGTGGTGGCTTTCTCCATGTGCATCATCTGTCTCCTAATGGCTGGTGATACTTGGACGGAGACTCTGGCGTACGTGTTGTTCTGGGGCATGGCCAGTGCTCTCACCGCTGCCGTCATCGTGGTCAATGGACGCGAGTTTGTTGATGCACCCAAACTGGTCCAAAAAGAGAAGATGGATTAAATATGGAGATTTCTTATCACTGTTTCCTCTTTATTTTCCCACAAGAGTTTATGATGACCTGCTCTCCGTACTTCTTCAGAAGAGCAATACAACAGCCTGTATTACCTTATAATTTACTATCTGCACTACAAATGTTTTTGAATCACGGCACATGGTGTCCAAATTTTCCCCGCCAATTTAGTTGCATCAGTTCAGAATTACACATGGATTGCTGAAGATTTGCATTGTGGCCATTGTATCGCCTTTCAAAGGCTATTGCGCTGCTACTTTTTGGCGATCGATCTCAATTGACCCGTTGTGAAATTAGAGTTATTGTTTTGGCTCTAGAGTTTCAGCTTTATGATATCGGACACCAGACGTGTGGCCATTCGCCCAGACTATGGGTTGACAGATCAATGAAGGTCTATTGTAATTAGATTGCTAGGCAAGGGAATGTTACACAATGCACCAGTGACTCATCCCTCCGTTATTACCATTTCTGTCCTTTCAAATCTGTCCCGAAATCAGCCTTATGCCTCAGTTATATTTGCGAGTTGTTCTTTGCAGTGGCAGTTTGGGTTTTAATGTGGTT
>TCONS_00029258
GGAAGTGAAGATGGCGAACGCCTACGAGAGGTTCAATCTGCATTCCACACCTGAGAAGTTCTACATTGAGGCCTGTGATGATGGAGCTGATGACGTGTTGGTCATTGATAGGGTGTCCACCGAGATGACCCTTGCAGGTATTAAGGACATTCCACCATCAGGCATAACCAGGCCCATATGTGGAGTCATGGGAACTGTTCGCCTGGTAGCTGGTAGGCCCCACCTTATTTATATTCCACATAGCATTAATTGTACGGCTCCACAATACATCATTTCAGCATATAAATGTGCAAATCTCCAATGTCGGGTTGGGGTTATAATAGCCAGCCACAACAAAATGGGATTTTTATGGAGTCATCATTTCAAGCAGTTTcaatttaactatttaaaatattacagCTATTTACTCTCTTTTATTCATctatgttaggctgctttgacatat

Function

symbol description
sacm1la Predicted to enable phosphatidylinositol-4-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum. Orthologous to human SACM1L (SAC1 like phosphatidylinositide phosphatase).

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042578 phosphoric ester hydrolase activity molecular_function
GO:0004438 phosphatidylinositol-3-phosphatase activity molecular_function
GO:0043812 phosphatidylinositol-4-phosphate phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-122 Predicted to enable phosphatidylinositol-4-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum. Orthologous to human SACM1L (SAC1 like phosphatidylinositide phosphatase).

Ensembl:

ensembl_id ENSDARG00000015290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029257 False 2343 mRNA 0.47 20 26967357 27006764
TCONS_00029258 True 445 lncRNA 0.42 3 26991921 27006763

Neighbor

gene id symbol gene type direction distance location
XLOC_014828 zbtb12.2 coding downstream 3009 26957425 ~ 26964348 (-)
XLOC_014827 zbtb12.1 coding downstream 23421 26937543 ~ 26943936 (-)
XLOC_014826 skiv2l coding downstream 43400 26869428 ~ 26923957 (-)
XLOC_014825 prrt1 coding downstream 98254 26858039 ~ 26869103 (-)
XLOC_014824 FP085398.2 coding downstream 130233 26828181 ~ 26837124 (-)
XLOC_014830 gabbr1b coding upstream 33769 27040533 ~ 27261102 (-)
XLOC_014831 BX539323.1 coding upstream 165950 27172714 ~ 27172830 (-)
XLOC_014832 gtf2h4 coding upstream 276308 27283072 ~ 27339872 (-)
XLOC_014833 mgat1b coding upstream 360168 27366932 ~ 27395531 (-)
XLOC_014834 vars2 coding upstream 392404 27399168 ~ 27448606 (-)
XLOC_014711 CR382300.3 misc downstream 7238602 19728690 ~ 19728755 (-)
XLOC_014822 NA non-coding downstream 160138 26803869 ~ 26807219 (-)
XLOC_014821 NA non-coding downstream 179077 26786900 ~ 26788280 (-)
XLOC_014820 NA non-coding downstream 186659 26779546 ~ 26780698 (-)
XLOC_014813 BX842688.1 non-coding downstream 1448817 25518420 ~ 25518540 (-)
XLOC_014835 NA non-coding upstream 446788 27453552 ~ 27463611 (-)
XLOC_014836 NA non-coding upstream 457166 27463930 ~ 27470389 (-)
XLOC_014839 NA non-coding upstream 564942 27571706 ~ 27575094 (-)
XLOC_014841 BX548075.1 non-coding upstream 574986 27581750 ~ 27584737 (-)

Expression


Co-expression Network