Fish Transcriptome and Expression Database

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model fish

XLOC_014831 (BX539323.1)

Basic Information

Item	Value
gene id	XLOC_014831
gene name	BX539323.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	27172714 ~ 27172830 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029261
tgccacagccatatcaccctgtagTCCAAGAGCagctactcactgaagctaagcagggctgatcCTGGttagtacctagatgggagaccagtagggaacactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114164

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00029261	True	117	rRNA	0.51	1	27172714	27172830

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014829	sacm1la	coding	downstream	165950	26967357 ~ 27006764 (-)
XLOC_014828	zbtb12.2	coding	downstream	208366	26957425 ~ 26964348 (-)
XLOC_014827	zbtb12.1	coding	downstream	228778	26937543 ~ 26943936 (-)
XLOC_014826	skiv2l	coding	downstream	248757	26869428 ~ 26923957 (-)
XLOC_014825	prrt1	coding	downstream	303611	26858039 ~ 26869103 (-)
XLOC_014832	gtf2h4	coding	upstream	110242	27283072 ~ 27339872 (-)
XLOC_014833	mgat1b	coding	upstream	194102	27366932 ~ 27395531 (-)
XLOC_014834	vars2	coding	upstream	226338	27399168 ~ 27448606 (-)
XLOC_014835	NA	coding	upstream	280722	27453552 ~ 27463611 (-)
XLOC_014836	NA	coding	upstream	291100	27463930 ~ 27470389 (-)
XLOC_014711	CR382300.3	misc	downstream	7443959	19728690 ~ 19728755 (-)
XLOC_014824	FP085398.2	non-coding	downstream	335590	26828181 ~ 26837124 (-)
XLOC_014822	NA	non-coding	downstream	365495	26803869 ~ 26807219 (-)
XLOC_014821	NA	non-coding	downstream	384434	26786900 ~ 26788280 (-)
XLOC_014820	NA	non-coding	downstream	392016	26779546 ~ 26780698 (-)
XLOC_014813	BX842688.1	non-coding	downstream	1654174	25518420 ~ 25518540 (-)
XLOC_014839	NA	non-coding	upstream	398876	27571706 ~ 27575094 (-)
XLOC_014841	BX548075.1	non-coding	upstream	408920	27581750 ~ 27584737 (-)
XLOC_014843	BX548075.2	non-coding	upstream	416505	27589335 ~ 27605740 (-)

Expression

Co-expression Network