XLOC_014835


Basic Information

Item Value
gene id XLOC_014835
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27453552 ~ 27463611 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029277
ATAGCAGATGGGCTGTAATCTCTGGAAGATGTACCTGCCTGCATTTAGAACCAACAAAACTAAAGATTTCTCGTCGTAGGTATGTTTGATTTATCTTGTCAAAAGCGATTCGCCGTTTGACATCAATACAGTTTAGCATTTCAAGTTGTGGAGACGATCCTGGATGTGAAGCTTGCTCAGACATGCTAACAGACGCCGTTTCGCCTGAGGAAAATGCTGCTTGAGACCAAGCAATGCTACCACGGTGCATTCAGAGTAAAGGGAGGACAGACTGATGTGAATGCTGGGATACAGATGACTGCAGTGACGGTCCTGATGGGAATCAACTGTATCTGACATCAGTGGAAAGATGATGTGCATTTGGTCTTGGCCACTGGCCAGGATTCAGCCATGCACCCTTTATACCAAACATAATCAGTTTACACCGTAAAGCCAGACGGCATGCTTCGTTCCCAATAATTAGCTGGATTTTATGCCAATTTctgctaaataaatgcagccatggAGCCCAGGATGAGATGATGTACCTTACATCGCATGATGACTGATATTCTCCATCGCTCATTTCATGTAAGGCATAAGAACGAAGGGATGATAAACCAATTATACACGTTATAGATCAATCCTGTTGTTTAAATGACAatatgctgttaatttactcatgcTCCGGTAGTCCAAGAGGACTTTTTCTTCAACagattttgtttcatgttttagaGTCACACATATTTATTTCGAGTGCTTTTATTTACTCTCAAAATGTCAGACTTgcattatatgaatcaccaaggaccacagtttAAGCTAATATTCCATATTGTCAACAAAATTAAAAGTCAGGATGACCTGAGGGTGAGTGAATTgacagcaaatgttcatttttaggtaatCTATCCCTTAAGCGACCCTCTGCTGTTTAATTTGGATTAATGATCCAGCTAATGCTCTGAACTCGAGCATAACAGATGTTTCTCAGTCTACTAAGAAAAAACACATCAATTTCTTTGTATGTTCGTGCGGACTAGTCTGATTGTCTGAAGGGAGACTCACTAACTCACTCAAAACTAATGGAGATGTTTTGatcataaaaatattcaaaaggtTGAGTTCctgaaatttgtatttattcatttattgaaatTCACTATAGCACACAACACATATAACGCTTCAATTTCCTCAAGTGATATGAAGAAATACTG
>TCONS_00030238
ATTCATGTCTGCGACTAGCAGTCTATTAAGTGCGTACATCCATAAAAAAGGACTTTATTTGTCCAGATGTAACGTCACAAATCTTATGGTGAAGGTCGTTTTGTTGCGATGACTTAATGTTACCGGGTTGTGCACGTAAGTACTGCGTAGCAACGCCCGATTAGTGAATGAATTGTTCTAACGAGTCGGATCGTTTGAGTGAACCAGTTGAAGGGGGTTACGGGCTTTGTTTGGTTCAACAAAAGTCTCCgccatacattaaaaaaaaggtttaaagtaTGAATTAAAGTTATAATTGATATAAATTGAAATGACAAAATGCTTAAATATGAGTTTAGTTGCCTTTCTTAAAAAGTATCATTTATCCCTgtagttgaaaaaaaattatataaaaacgtCTACTAAATCCTCACTAAAAACGTAAAAAATCCCAGCACTGGCCGCAAGCGTAAGATTTTATTCGGATGTTCAAGCAATGACTGCCTGTAAGTGGCCTGTGATTTCAACGTAAAGGAATCCCTATTGAATTGGTAAACTAAACCAATTCATTAAAATACGCCGTTTGAAAGAGTCGATTCTTTGAAACGAGTCAGTCTGCTTATTCCTAGTCAAGTAAGTTAAACTGGCTCCCGCACGAGTTAAGACGAcacgacggcagtttgcgtttCGTGTTTAAAAGAACCTTATGAATTTCGTTGGTTTGTGTTATTTGGCTGTCGTCGAGCTGTTTATTTGCTAAGCTGTTAAAGTTTGATCACGTCTATACCGGGTGTTAATGAACGGGTATGTGAAGCTGGCTTCGATAAGTGTATACAACTGTTTTTCACCTATAGCAGATGGGCTGTAATCTCTGGAAGATGTACCTGCCTGCATTTAGAACCAACAAAACTAAAGATTTCTCGTCGTAGGTGCATTCAGAGTAAAGGGAGGACAGACTGATGTGAATGCTGGGATACAGATGACTGCAGTGACGGTCCTGATGGGAATCAACTGTATCTGACATCAGTGGAAAGATGATGTGCATTTGGTCTTGGCCACTGGCCAGGATTCAGCCATGCACCCTTTATACCAAACATAATCAGTTTACACCGTAAAGCCAGACGGCATGCTTCGTTCCCAATAATTAGCTGGATTTTATGCCAATTTctgctaaataaatgcagccatggAGCCCAGGATGAGATGATGTACCTTACATCGCATGATGACTGATATTCTCCATCGCTCATTTCATGTAAGGCATAAGAACGAAGGGATGATAAACCAATTATACACGTTATAGATCAATCCTGTTGTTTAAATGACAatatgctgttaatttactcatgcTCCGGTAGTCCAAGAGGACTTTTTCTTCAACagattttgtttcatgttttagaGTCACACATATTTATTTCGAGTGCTTTTATTTACTCTCAAAATGTCAGACTTgcattatatgaatcaccaaggaccacagtttAAGCTAATATTCCATATTGTCAACAAAATTAAAAGTCAGGATGACCTGAGGGTGAGTGAATTgacagcaaatgttcatttttaggtaatCTATCCCTTAAGCGACCCTCTGCTGTTTAATTTGGATTAATGATCCAGCTAATGCTCTGAACTCGAGCATAACAGATGTTTCTCAGTCTACTAAGAAAAAACACATCAATTTCTTTGTATGTTCGTGCGGACTAGTCTGATTGTCTGAAGGGAGACTCACTAACTCACTCAAAACTAATGGAGATGTTTTGatcataaaaatattcaaaaggtTGAGTTCctgaaatttgtatttattcatttattgaaatTCACTATAGCACACAACACATATAACGCTTCAATTTCCTCAAGTGATATGAAGAAATACTG
>TCONS_00029278
AAGATTTCTCGTCGTAGGTATGTTTGATTTATCTTGTCAAAAGCGATTCGCCGTTTGACATCAATACAGTTTAGCATTTCAAGTTGTGGAGACGATCCTGGATGTGAAGCTTGCTCAGACATGCTAACAGACGCCGTTTCGCCTGAGGAAAATGCTGCTTGAGACCAAGCAATGCTACCACGGTgatttttagcatgtttctaatttATGTTCTTATTACATTCTCTAACGTTACCTGGCTTTGAGTTTGGCACGGGTGTGGCCTTTGTGTAGTTTACACTTCATTTGTGCTAATACAAACACGCTGTAATACAGGTCTGTTGAGGTGTCATTGCTAACGCCTGTGTCAGTATAAAACTTTAGGGAACACTAAAAACCTTATATATTTAAAACCTTTAATAGCCATATTAATTTGTGCTACCAGTCGATATTAGTGCTTTACTGCTATAACTGGGTTAATTACAGTTGTTTATCAATAACTTTGTAACTTACTGACACTTTATAGATGTCCTAGGGTTTTAATTAACTCCCTTTGTAAATTGTAAATGGACTTTATTCGTAGTTGGACAAacacttatacattttaaaagaaactaCTATTTCAGTATTTTACTTATAAACTTAAAACTCTTCTTGCTTCTTGTCAGTTATTTGTGAAATTCACCAGCTGAAAATTGAATTCCTTAACAATATTTAGGCTTCAACATGACAGCAGTTGTAGGGCGAGTTTGGGGGTGGGTCAGTCCAGCAAATCTTTACTCGTCTTGGGGCAGTACGACCAAACCAGAGACACCCGCCACCATTAAACATGAGACTAAAAGTGGCTTATGGGGACTGACTTCCTGGGTTTGGAGGGGTGAGAATGCCAAAAAGGACCAAAAGACAATTACTGAGGAATTCTGGGAAACTGAGGAGCATTTCAAGCCTTTGGAAGTAGAGGAGCTTCGGGCTTTGAGGCCTGATCTTGAGACTGAGAAGGTTGTGGTCAAAAGCTCCCCAAGCTGGTGGAGGCGAATGCTTCCATCCAGATACTTTTTTTGGCCCCGgtggtcatcatcatcatcatccaccaAACTTCGTCAGCAGAAATGTGCTGGGTGGAATGAAGGCACATGGGACAGTGATGAGGTTGATGGAGAATCAGACTACGGGACACCTCCGCCGTCTCCAATGCCGCTGTCCCAAAAGTCAGCATTCCGCTTTTTCTCTCGCTCGTGGACGGGGAACATCATGCCTGAACATTAcgacatttgttttaatttcctCCGACATCTTTTTGACTTATTCGTAGTAGGCTTCCTGAGTACTGTATCCCCTCCAACCAAGGTCATTTTGGACGTGCTGGGGGTGCAGGGGGCACTGAAGCTGTGGCTCCATGGCATGGCCATGTTTATAGTGTCAGCTGTTGGAATGGCTGGACTGCTGTGGGTGGTACAGGAGTACCTGCTGCCATTTGCTTTGATTTATGGCATAATTCAAGCAATGGTCATCTCTGTCAGTGTTCGTCAGAGTGAAGCTCTGGCAGAAGGGGATGATGGGAAAGGTGACGAAGAGGTCACAGAGGGTGAGGAAGAACAGGCCGACATATGGGAGCAGAATGAACCACAGCAGACTGCTGATGAAAGCAACAAAGGAGTTAAAAAAAGGAGTTGAAGTCTTTGGAGAAGTGTATTTTGGGTTGCTGACAAACTGAAAACCCAAGATATTTCATTGAAGATTTCCTCTTTCATCAACACCGACCAACAAGATTCTTATCAGCAAGAGAAAAGCACCCTAAACGCACCAGCACATCTTCTTCTCTCCATTGATGAACTTTTTTTTCCTGACCTTAAAATATAGATCtaataacccccccccccaccccccccccccccaaaaaaagattTGCATATCATACCAGCACAACACATGGATAAGTagaaatataaatattgaaaagCAACAGTGACACTGCAAAGAATGGAGGAAAAAGTCACCTACTAAACTGAAGAACCAGCATTGAATGACTGATTGATTGTCAGGGATATTACAGAGACTTTGAATGGAATGCCACAtgattttaaaggcttaaccaaaTAAAACGATAAGTTGATTTAATGTCCACGCTGTATGTACTGCACATCTGCATGTGTCACTTTAATCATAGCTGGGTGTTGCCTCAAACAGCGTCTCTGAATTGTTCATATCTAATGTGTGCTCGTCCGTTTAATGGATTGAGTCCATTATATCTTCCATCCTTCATTCAACCCACTTGTTCACTTCTAAACTATCTCAATGAACTTTTATAGAGCAGTTGTAAAGGATCTGGATGCTACTTGTACTTAAACCACTTTTCAAAAGCAGCAAATCTGCACACTACTTTATTGATTATATTTTCCAATCTTTTAACCCGGTAAACATGGCATTAAAACCACTCTGTTTGACAAATGTTAATGTAAGCTTCATAACAGCATGTTTATGATTGATTTCAAATGTATTGCCATTCTTTATTTCAATCGATTATATCTTTTGTGCCTCATAATGTCTGGTTATTTGGCCAGTTCACAGGGAATTATGGGTAACGAAGTTTAGTAATTTTGCACAGCTGCATTATATCCAATGCTTTGTTGCACAAATGTGTTTAGCGCTTGCAAGAATAGCTTTCTCTTCCCGAATGTGTTCAACAAATAGCTTTTTATCTATGCATGTTAAGATAGAACTGCGGAAAACTCTTACATTGTGAATGACTTTGTTTATTTTAGGGTACTGGCTCGAACGTTGTTCACGTTTGTTATTTAAGCATTAAACTTAAAGTAGCTCTAGAATCGTCGTTTACTTCAAATTTGAGCAATGCaagaaaacatgtaaccatttaaagggtctttaaaatgtttttcatttttgtaagTCTTGAGTCCACCAATGTGTGGACCACTGCTGAAGCCCTGAAGGCTGTGAAGAGAAATGAAATCTGCTGTAGGGTGATGTCGATTGCAGCTCAGAGATTGATGTATTAAAGATTGTGGGACACAGATGGAGAGACCTACATCTACAGTTCTTAAGTGCTAAACACTGAGTCTTTAATagtctttacagtttaaaataaattccTTTCTCCACA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-100922-192 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C6orf47 (chromosome 6 open reading frame 47).

Ensembl:

ensembl_id ENSDARG00000091932

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029277 False 1202 lncRNA 0.39 2 27453552 27462782
TCONS_00030238 False 1866 lncRNA 0.38 2 27453552 27463611
TCONS_00029278 True 3100 mRNA 0.40 2 27456967 27462720

Neighbor

gene id symbol gene type direction distance location
XLOC_014834 vars2 coding downstream 4946 27399168 ~ 27448606 (-)
XLOC_014833 mgat1b coding downstream 58021 27366932 ~ 27395531 (-)
XLOC_014832 gtf2h4 coding downstream 113680 27283072 ~ 27339872 (-)
XLOC_014830 gabbr1b coding downstream 192450 27040533 ~ 27261102 (-)
XLOC_014831 BX539323.1 coding downstream 280722 27172714 ~ 27172830 (-)
XLOC_014836 NA coding upstream 319 27463930 ~ 27470389 (-)
XLOC_014837 si:ch211-152p11.4 coding upstream 58814 27522425 ~ 27542433 (-)
XLOC_014838 si:dkeyp-46h3.8 coding upstream 82790 27546401 ~ 27570363 (-)
XLOC_014839 NA coding upstream 108095 27571706 ~ 27575094 (-)
XLOC_014840 si:dkeyp-46h3.3 coding upstream 113488 27577099 ~ 27579835 (-)
XLOC_014711 CR382300.3 misc downstream 7724797 19728690 ~ 19728755 (-)
XLOC_014824 FP085398.2 non-coding downstream 616428 26828181 ~ 26837124 (-)
XLOC_014822 NA non-coding downstream 646333 26803869 ~ 26807219 (-)
XLOC_014821 NA non-coding downstream 665272 26786900 ~ 26788280 (-)
XLOC_014820 NA non-coding downstream 672854 26779546 ~ 26780698 (-)
XLOC_014841 BX548075.1 non-coding upstream 118139 27581750 ~ 27584737 (-)
XLOC_014843 BX548075.2 non-coding upstream 125724 27589335 ~ 27605740 (-)
XLOC_014845 NA non-coding upstream 337444 27801055 ~ 27802557 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_09854830_09855777 NA coding CI01000054 null 9854328 ~ 9855897 (+)