XLOC_014847 (srd5a1)


Basic Information

Item Value
gene id XLOC_014847
gene name srd5a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27836913 ~ 27858033 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029310
AGATTTCTCCATGGTGTCAGACTGTTTCGTGCATCTACTGTGAACTACGTGTAAGTTGCCGTCTTATTCTTAATCGGTTTTGATTAGCAACTATGGACGCTCTTCTGAATACGTTATTTTCTTCTGAGGAGGAAGAATTGTACGTTTTGGATTGCTTATCGTATCTGATGATGGCCATGGCTCTGATAACTTTTGTTGCTTTACTCTTTGAGCATGTGCCCTATGGCAGGTATGCATCCAGCAGGTTTGGATTCCCTGTAAATGTCAAGTTGGCTTGGTTCGTTCAAGAGCTGCCTTCTTTTTTGTTGCCTTCGAGTTTAGCTTTATGGAGTTCAAGTTCAAAAATAATCCACCTGCCCAACCAACTCCTCCTGCTCATGTTCGTTTGCCATTATATGCAAAGGTCTCTCATCTACCCGTTTTTAATTAGAGGAGGGAAATCAACACCGTTCATCTCCCTAGTACTAGCCTTTGTCTTCTGCATCTATAATGGGTACCTCCAAGGTAGATACCTGAGTCACTATGCTGATTACCCAGCTGATTGGGTTACACACCCCTGCTTCATCATAGggTCTTGTATGTGGTTCCTGGGATGGATTATTAATATGCACTCTGACCATATCCTCAGAAACCTCCGTAAACCTGGAGAAACAGGTTATAAAATACCTAGAGGAGGCATGTTTGAGTATGTGTCTGGAGCAAACTTCTTTGGAGAGATTGTGGAATGGGCTGGATTTGCTTTAGCTGGTCAATCCATCCATAGTGCAGCTTTTGCTCTCTTCACTCTTATCGTGCTGTCCTGCAGAGGAATGGACCATCACAAGTGGTATCTGGCAAAATTTGAGGACTATCCAAAATCAAGGAAAGCTTTAATACCGTTTCTGCTCTGATCTTCTGATGTTCGTGGTCAATCTGGAGCAGCTAGAGGTGTCGGGTCGAGCCGTGAGCAATCTGTCGGACCCTTCTGTGGAGAAATATCCCCAGCCAAAGCAATGATGAAACCCCCCTGCAAACCGTATTGTAGGCACACATAACCTTTTTGCAACACTGCGCAACCCCTTCAACATGGGTTTAAGGTGATAgtttgcataaaaatgaaaatatgctgttAAATCACTTACCCCCAGGCCATCCAAGATGGAAGTCACATagtagaaagtttttttttttttggtatttgtgattCATAAAACACATGTAATCACTTTTAGagtcaaaaatatatacaggcaAATTAAAATGAATACCTGTGGTAGACTTACAGTTGAAAACAAAGCGATTAGacctcaaatatttcccaagtgatgtttaagagAGAACAAGTacaattttcatagtatttcctgaTATATTTTTCCTCTGGAGCAAGTCTTATTTATTCTAGTTTGACttgaattatattattattatttttaaaactgctaaggtcaatattagtgGCCCCTTATAGGTAGAGAGATCTGGAAAATGCTAACTTTAGTCTTTTAGCATTAAAATGCAAATCCCTAAATGCAAACTGCCATCCAAAGTCATGAACGTGCACATGATAGACAACCATAGACAACGTAACACTACATCATGAGCCAGAAgaaatctgtggacattttttgctatttctacccagaattttgttaaaaatcttcGGATTTATACGGAATGATATTAggtgtatcataactaaaatcttaatatataaaataaaaagtaatacctatATAACATCtacttaatgtttacaatgcaaatccatctagatctactttatttggt
>TCONS_00029311
AGATTTCTCCATGGTGTCAGACTGTTTCGTGCATCTACTGTGAACTACGTGTAAGTTGCCGTCTTATTCTTAATCGGTTTTGATTAGCAACTATGGACGCTCTTCTGAATACGTTATTTTCTTCTGAGGAGGAAGAATTGTACGTTTTGGATTGCTTATCGTATCTGATGATGGCCATGGCTCTGATAACTTTTGTTGCTTTACTCTTTGAGCATGTGCCCTATGGCAGGTATGCATCCAGCAGGTTTGGATTCCCTGTAAATGTCAAGTTGGCTTGGTTCGTTCAAGAGCTGCCTTCTTTTTTGTTGCCTTCGAGTTTAGCTTTATGGAGTTCAAGTTCAAAAATAATCCACCTGCCCAACCAACTCCTCCTGCTCATGTTCGTTTGCCATTATATGCAAAGGTCTCTCATCTACCCGTTTTTAATTAGAGGAGGGAAATCAACACCGTTCATCTCCCTAGTACTAGCCTTTGTCTTCTGCATCTATAATGGGTACCTCCAAGGTAGATACCTGAGTCACTATGCTGATTACCCAGCTGATTGGGTTACACACCCCTGCTTCATCATAGggTCTTGTATGTGGTTCCTGGGATGGATTATTAATATGCACTCTGACCATATCCTCAGAAACCTCCGTAAACCTGGAGAAACAGGTTATAAAATACCTAGAGGAGGCATGTTTGAGTATGTGTCTGGAGCAAACTTCTTTGGAGAGATTGTGGAATGGGCTGGATTTGCTTTAGCTGGTCAATCCATCCATAGTGCAGCTTTTGCTCTCTTCACTCTTATCGTGCTGTCCTGCAGAGGAATGGACCATCACAAGTGGTATCTGGCAAAATTTGAGGACTATCCAAAATCAAGGAAAGCTTTAATACCGTTTCTGCTCTGA
>TCONS_00029312
AGACTGTTTCGTGCATCTACTGTGAACTACGTGTAAGTTGCCGTCTTATTCTTAATCGGTTTTGATTAGCAACTATGGACGCTCTTCTGAATACGTTATTTTCTTCTGAGGAGGAAGAATTGTACGTTTTGGATTGCTTATCGTATCTGATGATGGCCATGGCTCTGATAACTTTTGTTGCTTTACTCTTTGAGCATGTGCCCTATGGCAGGTATGCATCCAGCAGGTTTGGATTCCCTGTAAATGTCAAGTTGGCTTGGTTCGTTCAAGAGCTGCCTTCTTTTTTGTTGCCTTCGAGTTTAGCTTTATGGAGTTCAAGTTCAAAAATAATCCACCTGCCCAACCAACTCCTCCTGCTCATGTTCGTTTGCCATTATATGCAAAGGTCTCTCATCTACCCGTTTTTAATTAGAGGAGGGAAATCAACACCGTTCATCTCCCTAGTACTAGCCTTTGTCTTCTGCATCTATAATGGGTACCTCCAAGGTAGATACCTGAGTCACTATGCTGATTACCCAGCTGATTGGGTTACACACCCCTGCTTCATCATAGGTAAGTGCAAGTATGTATTTATTCACAGTCTAAAGCAGATGTACTCAAAAGACTACACTCATAGAAAagaaatagcattttaaagacatgcAGCAATGTGATATCCTGTATGTTCGTTGTACTACAtgctttacactttgcattgtgTAAATGGCAGATGGTCCTCTTAGCAGcatgaaaaacaaacattaaaactgTAAACCAAAAAGCACCCCAATAACAATAAGAGGAGTTGTCATCATGTCAGTGAGTTTATTGAGTTCAAGTTCATTCCTGAGACCTCTAAGTTGAAGGGATTTACACTGGGCTGGGTATAGGGTTGGTGTATATATTAAGTCTATAGGTAAGTCTAAGgtagtctatattaaaaaaaaaaa

Function

symbol description
srd5a1 Predicted to enable 3-oxo-5-alpha-steroid 4-dehydrogenase activity. Predicted to be involved in steroid biosynthetic process. Predicted to act upstream of or within cell differentiation; sex differentiation; and steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in prostate cancer and prostatic hypertrophy. Orthologous to human SRD5A1 (steroid 5 alpha-reductase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008202 steroid metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0047751 cholestenone 5-alpha-reductase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
ko00140 Steroid hormone biosynthesis

ZFIN:

id description
ZDB-GENE-060929-938 Predicted to enable 3-oxo-5-alpha-steroid 4-dehydrogenase activity. Predicted to be involved in steroid biosynthetic process. Predicted to act upstream of or within cell differentiation; sex differentiation; and steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in prostate cancer and prostatic hypertrophy. Orthologous to human SRD5A1 (steroid 5 alpha-reductase 1).

Ensembl:

ensembl_id ENSDARG00000020509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029310 False 1770 mRNA 0.39 6 27836913 27858033
TCONS_00029311 False 890 mRNA 0.43 5 27844275 27858033
TCONS_00029312 True 929 lncRNA 0.40 2 27856723 27858015

Neighbor

gene id symbol gene type direction distance location
XLOC_014846 tent4a coding downstream 6095 27807415 ~ 27830818 (-)
XLOC_014845 NA coding downstream 34356 27801055 ~ 27802557 (-)
XLOC_014844 adcy2b coding downstream 59685 27608927 ~ 27777228 (-)
XLOC_014843 BX548075.2 coding downstream 231173 27589335 ~ 27605740 (-)
XLOC_014842 si:dkeyp-46h3.2 coding downstream 248071 27586823 ~ 27588842 (-)
XLOC_014848 ube2ql1 coding upstream 99086 27957119 ~ 27966780 (-)
XLOC_014849 irx1b coding upstream 269621 28127654 ~ 28130658 (-)
XLOC_014850 NA coding upstream 379888 28237921 ~ 28239057 (-)
XLOC_014851 ndufs6 coding upstream 423168 28281201 ~ 28283877 (-)
XLOC_014852 nrsn1l coding upstream 498720 28356753 ~ 28367413 (-)
XLOC_014711 CR382300.3 misc downstream 8108158 19728690 ~ 19728755 (-)
XLOC_014841 BX548075.1 non-coding downstream 252176 27581750 ~ 27584737 (-)
XLOC_014839 NA non-coding downstream 261819 27571706 ~ 27575094 (-)
XLOC_014836 NA non-coding downstream 366524 27463930 ~ 27470389 (-)
XLOC_014853 CR391974.1 non-coding upstream 583808 28441841 ~ 28441960 (-)
XLOC_014854 NA non-coding upstream 635940 28493973 ~ 28789409 (-)
XLOC_014855 NA non-coding upstream 785605 28643638 ~ 28645384 (-)
XLOC_014856 NA non-coding upstream 959588 28817621 ~ 28824390 (-)

Expression


Co-expression Network