XLOC_014850


Basic Information

Item Value
gene id XLOC_014850
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28237921 ~ 28239057 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029785
CTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTAAAAATGTGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCATTATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCGTGTAATATGTGTAATAGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttatttcaggCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTGTAAcagagtatttttaaaaaattataataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGAGACAGCATCAAAAGCCACAGATGACCATGGAGTTGTTATTTCAATGGGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTC
>TCONS_00029786
CCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCATTATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCGTGTAATATGTGTAATAGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttatttcaggCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTGTAAcagagtatttttaaaaaattataataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGAGACAGCATCAAAAGCCACAGATGACCATGGAGTTGTTATTTCAATGGGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029785 False 737 lncRNA 0.34 2 28237921 28238788
TCONS_00029786 True 733 lncRNA 0.35 3 28237921 28239057

Neighbor

gene id symbol gene type direction distance location
XLOC_014849 irx1b coding downstream 107263 28127654 ~ 28130658 (-)
XLOC_014848 ube2ql1 coding downstream 271141 27957119 ~ 27966780 (-)
XLOC_014847 srd5a1 coding downstream 379888 27836913 ~ 27858033 (-)
XLOC_014846 tent4a coding downstream 407103 27807415 ~ 27830818 (-)
XLOC_014845 NA coding downstream 435364 27801055 ~ 27802557 (-)
XLOC_014851 ndufs6 coding upstream 42144 28281201 ~ 28283877 (-)
XLOC_014852 nrsn1l coding upstream 117696 28356753 ~ 28367413 (-)
XLOC_014853 CR391974.1 coding upstream 202784 28441841 ~ 28441960 (-)
XLOC_014854 NA coding upstream 254916 28493973 ~ 28789409 (-)
XLOC_014855 NA coding upstream 404581 28643638 ~ 28645384 (-)
XLOC_014711 CR382300.3 misc downstream 8509166 19728690 ~ 19728755 (-)
XLOC_014843 BX548075.2 non-coding downstream 632181 27589335 ~ 27605740 (-)
XLOC_014841 BX548075.1 non-coding downstream 653184 27581750 ~ 27584737 (-)
XLOC_014839 NA non-coding downstream 662827 27571706 ~ 27575094 (-)
XLOC_014836 NA non-coding downstream 767532 27463930 ~ 27470389 (-)
XLOC_014856 NA non-coding upstream 578564 28817621 ~ 28824390 (-)
XLOC_014857 NA non-coding upstream 683487 28922544 ~ 29030799 (-)

Expression


Co-expression Network