XLOC_014851 (ndufs6)


Basic Information

Item Value
gene id XLOC_014851
gene name ndufs6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28281201 ~ 28283877 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029316
GCTGGGTAATGATCACAGGCAAACATGGCAGCCATCCTTCCAAGGATCTTGTCCTTCGGTAAAAATACGAAGGTTTTGCTCAACTGTTTGAGATTATCAGCAGTTCCAGTTCAGCAGTACAGTGTTCCGGTTTCTAACCATGGAGAAATAATTACCCACACGGGACAGgTCTATGATGAAAATGATGTGAGACGTGCTAGATTTGTTGGCAGACATAAAGAGGTGAATGAGAACTTTGCAATCAACCTGGTTGCAGAAGAACCAGTCTCACATGTAGAGTCCAGGGTGGTGTCCTGTGATGGAGGCGGAGGGGCTCTCGGCCACCCCAAAGTTTACATCAATTTGGACAAGGACACCAGAGTTGGCACATGTGGATACTGTGGGTTGCAGTTTAAGCAGACGCATCATCACTGAAGAACCATTTTGTTTGTTTGGGCCATATATTATTCAACTTTGAGGATCTAAAACTTTTCTCTGTACaataaatattactataatataaacacaa
>TCONS_00029317
ATCCTTCCAAGGATCTTGTCCTTCGGTAAAAATACGAAGGTTTTGCTCAACTGTTTGAGATTATCAGCAGTTCCAGTTCAGCAGTACAGTGTTCCGGTTTCTAACCATGGAGAAATAATTACCCACACGGGACAGgTCTATGATGAAAATGATGTGAGACGTGCTAGATTTGTTGGCAGACATAAAGAGGTGAATGAGAACTTTGCAATCAACCTGGTTGCAGAAGAACCAGTCTCACATGTAGAGTCCAGGGTGGTGTCCTGTGATGGAGGCGGAGGGGCTCTCGGCCACCCCAAAGTTTACATCAATTTGGTAAACAAGTATTTCATATAAGAACAGTTtctaaatttgattaaaataaatatgtagagGCCAGGATCACGTTATTAAGTAATATGCAAATTTTTTGTGTATATACAGTGATTACTATTTACTCAATTTGAATGGTTTAAAAATGTCTGTAGATTAAACACATAAAACATGCAAATCCTGTAACATTTTATCATAAGCACACATTTGTCAtttaaacaaagatgaaaaaagcaTTATTTTCAAAAACTTTCAAGTTAAAAGCTGTATTTGAAGGTTAACATTTTCAAGCCTCTACATTTACAtatagtca

Function

symbol description
ndufs6 Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in cervical cancer and nuclear type mitochondrial complex I deficiency 9. Orthologous to human NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6).

GO:

id name namespace
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0016020 membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040912-86 Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in cervical cancer and nuclear type mitochondrial complex I deficiency 9. Orthologous to human NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6).

Ensembl:

ensembl_id ENSDARG00000056583

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029316 False 508 mRNA 0.43 4 28281201 28283877
TCONS_00029317 True 622 mRNA 0.36 3 28281537 28283844

Neighbor

gene id symbol gene type direction distance location
XLOC_014850 NA coding downstream 42144 28237921 ~ 28239057 (-)
XLOC_014849 irx1b coding downstream 150543 28127654 ~ 28130658 (-)
XLOC_014848 ube2ql1 coding downstream 314421 27957119 ~ 27966780 (-)
XLOC_014847 srd5a1 coding downstream 423168 27836913 ~ 27858033 (-)
XLOC_014846 tent4a coding downstream 450383 27807415 ~ 27830818 (-)
XLOC_014852 nrsn1l coding upstream 72876 28356753 ~ 28367413 (-)
XLOC_014853 CR391974.1 coding upstream 157964 28441841 ~ 28441960 (-)
XLOC_014854 NA coding upstream 210096 28493973 ~ 28789409 (-)
XLOC_014855 NA coding upstream 359761 28643638 ~ 28645384 (-)
XLOC_014856 NA coding upstream 533744 28817621 ~ 28824390 (-)
XLOC_014711 CR382300.3 misc downstream 8552446 19728690 ~ 19728755 (-)
XLOC_014845 NA non-coding downstream 478644 27801055 ~ 27802557 (-)
XLOC_014843 BX548075.2 non-coding downstream 675461 27589335 ~ 27605740 (-)
XLOC_014841 BX548075.1 non-coding downstream 696464 27581750 ~ 27584737 (-)
XLOC_014839 NA non-coding downstream 706107 27571706 ~ 27575094 (-)
XLOC_014857 NA non-coding upstream 638667 28922544 ~ 29030799 (-)

Expression


Co-expression Network