XLOC_014855


Basic Information

Item Value
gene id XLOC_014855
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28643638 ~ 28645384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029787
AGAAAAGCTGGCTCTAGCAAAAGAGATTGTGTCATTGTTCCCCTTGTTAAGGATTCAGGTGCCCTTTGGGGAAAATGAGGGACATGAGCATTTTTTTGATGGGCCATCACACAGTGGATTTATTGAAATGAGATTACGTAACATCAGACGGAAGCTTCAACAGAGCCAGCGGGTGTACAGTTTGAAACGTCGTCATTGTACACCGCAACCTTCTTTACCAAGTCCAGATGAAACTGTACCAAGTGAGTGGTTGACTCTGATAAAGAGGATGCGACCATCACCAGAGAATTCATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACCGAAGGAGATGGATAACAACAAAATCCCCAACTGTTGCTGAAATCTTCAAGGAATATCCTAGATTTCTTGACATGCCAGCTTTGATGGACATTGAATTTTCCAAGCTCACCGATGGGAAAGAAGACTTGTTTATCCGGAAATGGGAAGGGACGATAATTCCAAGACTCAAGGAAATAGCATCCTCGGAGAAGAAAAATGACATCAGACACTTACTGGAGAAGGCTGAGAATCAGCATGATGATGAACTGTGTTACACTATGTTGAAGATCCTTATTCATCTTCTTCCACCCACTGCATCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAAGTGCCGATATAGTTTTTATTGTGTTAGCTTGtgataaataaaattgtttttaatggAGCAACATTTTCTAATgcttttcattgtttcattttTGAAGGCTGGTACCAACGTTACATCTTTGCTCGCTGAATCCATGAATGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCCATCGGTTCTCTAGGACATGGATCCCAGTACGTAATTGTGGCAAAGAATGACTCTTTTGCTCTTCCACTTGATGTTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTACTGGCTGTGCAACCTTCAGTATCCATGCCAACTGtcttctgttttttctttttttgaacatATATATGACCTGTCTTTGTCCCAGTCATCTTGCAAACGATCAAAGGTCATGGAATTGATTGCTAAGGTGCAGTCTCGTACCTAATTGAAATAAGCATGTACACCTGTCCAAAGTGTCTTCAAAATGATTTTGTTGAAACAAAGGGGTTAATTTGGCATTTAAGGGAAGTGCATGCACTCTCTGATAGTTACAACCTAACTTTAATTTGTAGTCAAAATGGTTGCCCAAGAACTTATCATAATTTCAattcctttttaaaaaatctgaacagAGATCATTTTAAAACGAATTCATGCCCTTCTGAAGAGTCAGGACATACAAAGAA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029787 True 1371 lncRNA 0.40 4 28643638 28645384

Neighbor

gene id symbol gene type direction distance location
XLOC_014853 CR391974.1 coding downstream 201678 28441841 ~ 28441960 (-)
XLOC_014852 nrsn1l coding downstream 276225 28356753 ~ 28367413 (-)
XLOC_014851 ndufs6 coding downstream 359761 28281201 ~ 28283877 (-)
XLOC_014850 NA coding downstream 404581 28237921 ~ 28239057 (-)
XLOC_014849 irx1b coding downstream 512980 28127654 ~ 28130658 (-)
XLOC_014856 NA coding upstream 172237 28817621 ~ 28824390 (-)
XLOC_014857 NA coding upstream 277160 28922544 ~ 29030799 (-)
XLOC_014858 NA coding upstream 458023 29103407 ~ 29122225 (-)
XLOC_014859 NA coding upstream 541145 29186529 ~ 29188136 (-)
XLOC_014860 NA coding upstream 556659 29202043 ~ 29271026 (-)
XLOC_014711 CR382300.3 misc downstream 8914883 19728690 ~ 19728755 (-)
XLOC_014845 NA non-coding downstream 841081 27801055 ~ 27802557 (-)
XLOC_014843 BX548075.2 non-coding downstream 1037898 27589335 ~ 27605740 (-)
XLOC_014841 BX548075.1 non-coding downstream 1058901 27581750 ~ 27584737 (-)

Expression


Co-expression Network