XLOC_014859


Basic Information

Item Value
gene id XLOC_014859
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29186529 ~ 29188136 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030278
ctgactgaatggatGACTGTCAGGGTTGCAAGCAGGACATACATGTTACAGTTAAGTATTTCagctacaacatactgttaaatCCCAGTAACCATCTTGCCATTAATTGTaacttcacagtaaaatatagttaattcttcAAGagaatactgtgaaatcacagaaATGGACCTTACTATATACCTTGAAGTCACATAtggctgtaatttcactgtaattaagtgtaaaacaaatcacagtggcttactgtgaaagtaatacaattattagtcagtaatttactgttaattaagggtcaaatattttacaatgtatcAATAAAACTCATGTAAACATTTTGTCTGTCATTCTGTTTTTTAAGGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGATTAAAGTTGGACAATGAAGAAACGACAAGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCACGGAAGTGACTGTGGAAACTTGACTTGCCCTGGCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACATATGCATTTTAACTGTGACAAAGAATGGTGTTTTAACAAGTGACTGGTTAACACTGGAAGATATTAGAGGGTAGTATTCCCATGAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGAAACTGCTGTTTAAAATAAGATGATCAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTATGAGATTGTTGTTAGCCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTaagtaaaatttaataaattttagctCTAATCCATACTTGTTgagtttaattaatattattgcttgtaatctgttgcctcaattttattgtgtagatataaagcaatattttctagAGCTGATGACCAGGCTCCACactttttatgttaaatcta
>TCONS_00030279
ATCAGgaaaatgactgactgaatggatGACTGTCAGGGTTGCAAGCAGGACATACATGTTACAGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGATTAAAGTTGGACAATGAAGAAACGACAAGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCACGGAAGTGACTGTGGAAACTTGACTTGCCCTGGCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACATATGCATTTTAACTGTGACAAAGAATGGTGTTTTAACAAGTGACTGGTTAACACTGGAAGATATTAGAGGGTAGTATTCCCATGAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGAAACTGCTGTTTAAAATAAGATGATCAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTATGAGATTGTTGTTAGCCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTaagtaaaatttaataaattttagctCTAATCCATACTTGTTgagtttaattaatattattgcttgtaatctgttgcctcaattttattgtgtagatataaagcaatattttctagAGCTGATGACCAGGCTCCACactttttatgttaaatcta
>TCONS_00029788
TTCACTTCATTATGAACCTCATtatcaaaccaaaacaaaaatgatattgTCTAACACTATTTACTAATTACAACTTTTTGTATAGTGTCCGAGGCAGAggagacacatcaaccagcaagtgtgtaactTATCAGgaaaatgactgactgaatggatGACTGTCAGGGTTGCAAGCAGGACATACATGTTACAGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGATTAAAGTTGGACAATGAAGAAACGACAAGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGGTACTggcatcattatcatcatcattatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGAATCAGGCAAACTCCTCTTTCACTCCGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCACGGAAGTGACTGTGGAAACTTGACTTGCCCTGGCTCGCATTGGCACGCTAACTTAAGTCGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACATATGCATTTTAACTGTGACAAAGAATGGTGTTTTAACAAGTGACTGGTTAACACTGGAAGATATTAGAGGGTAGTATTCCCATGAACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGAAACTGCTGTTTAAAATAAGATGATCAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTATGAGATTGTTGTTAGCCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTaagtaaaatttaataaattttagctCTAATCCATACTTGTTgagtttaattaatattattgcttgtaatctgttgcctcaattttattgtgtagatataaagcaatattttctagAGCTGATGACCAGGCTCCACa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000280 nuclear division biological_process
GO:0016235 aggresome cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030278 False 1237 lncRNA 0.37 3 29186529 29187994
TCONS_00030279 False 939 lncRNA 0.39 4 29186529 29188007
TCONS_00029788 True 1163 lncRNA 0.39 3 29186547 29188136

Neighbor

gene id symbol gene type direction distance location
XLOC_014858 NA coding downstream 64304 29103407 ~ 29122225 (-)
XLOC_014857 NA coding downstream 155730 28922544 ~ 29030799 (-)
XLOC_014856 NA coding downstream 362139 28817621 ~ 28824390 (-)
XLOC_014854 NA coding downstream 397120 28493973 ~ 28789409 (-)
XLOC_014855 NA coding downstream 541145 28643638 ~ 28645384 (-)
XLOC_014860 NA coding upstream 13907 29202043 ~ 29271026 (-)
XLOC_014861 e2f3 coding upstream 86249 29274385 ~ 29294457 (-)
XLOC_014862 srfbp1 coding upstream 108055 29296191 ~ 29303788 (-)
XLOC_014863 fndc5b coding upstream 195350 29383486 ~ 29437109 (-)
XLOC_014864 NA coding upstream 562192 29750328 ~ 29796288 (-)
XLOC_014711 CR382300.3 misc downstream 9457774 19728690 ~ 19728755 (-)
XLOC_014865 CU861666.1 non-coding upstream 596959 29785095 ~ 29785212 (-)
XLOC_014869 NA non-coding upstream 726213 29914349 ~ 29915967 (-)
XLOC_014870 BX547939.1 non-coding upstream 959234 30147370 ~ 30300852 (-)

Expression


Co-expression Network