XLOC_014862 (srfbp1)


Basic Information

Item Value
gene id XLOC_014862
gene name srfbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29296191 ~ 29303788 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029329
GCGTGCGCGTAGAGCGACGTTAGCTAAGCAAGATGGCGGCCTCCTGAGCAGTCAACACTTCTCGctgatttttatgtttatttagtaGAGcTTTCAGGAAGAACATAAAGATGCCTGCGGCACTTAACCTCAGCAATGAGGTGGTCAAGATGAGGGCGGAGGTTAAAAGAATAAAGGTGTTCCTCATCAGGAAACTCAGCCGTCAAATCTCAGCCCTGCAGAAGAAGAAAGGAAATGAGGCGAGCTTGGAGAAAAATGGCAGGCGAGCAGCGAGACTTCGAGAGGAGATCCGAGAACTGAAAGCTGTGGTGCCAGACAGTGTAACCAAGGCTGCCCTACAGAAAGACATTAGCTTTGAGAAAGTGTGCCGTGACAAAGAGGCAAGCCTAACTGACCGTGCCACTGCCCGCATCGCCACACATCCTGAGTTCAGCAAGAAGATCCAGAGCTTAAAAGCAGCCATCAAAGCTTTCAAAGAAGAAAGAATGAATGCGAGAAAAGCGGAAAAACAAGCAAAAGGCAGTGCAGAAAGTGACAGTTCACAGGACACCGATGAAGAGGATGATGATGGTTCAGAGAGATCAAACAACAGAGATGATGAAGATGGACTGAAAGAGGATGAGTATGACAAAAAGACAGATGAATTGATTGATAGCTCCTCACAGGAGACATTGAATAAACAGACTAACCAGTGTCAGGAGGAAGAAAGGTTGGATGAAGAGGGATCATCTGAAGCAGTGAGCATCTCAGAAGAGGTGATCAGGATGAGGAAGGAGGTAAAGAGGACGAGGGTGGCGATCATTAGTAAACTGGCTGAAGAAGTTGCTTTTCTAAAGAAGAAGAAAGGTGAGGAATATGAGGTGAAGGAAAGCCAAGAGAGAGCAGCAGTTCTTCTGAAAGAAATCCAGGCTTTAAGGAGCCTTAAACCAGATCAGGTGACCATGACAGCACTTCAGGAGAACATGGAGCTGGAGAAGATTTTGCTGGACAACGAGGCAAGCCCAATTGACAGAGCCATCGCACATATTGCAACACATTCCCGCTTCATCAACAAGCTTCAGAAGATCAAAGAAGAAAAGATTAAGGCTGCTGAAGCTGAGAAGAAAAAGACTGACAAACCGGACACGGTGCAGTCCAAGAATGAAGATGAGGAACTGGAAGAGGAAGATGAGGAGGAGgtagatgatgatgataatgatgatgatgatgacgatgacgaCAGCAGTGATGAAAGTGAAGAGAATTGTGATAAAGTAGGTGAAAAGTCAAATCGTGTTTTCAATCAGATTGATAAATCAGGTGTTGTGGAACCAGATACAAGTGCAGAACCTGATACTTTTGAAATGCCACAATCCAAAACTGATGTCATGGCTCCAAATGACCAAAACTTCTCTTCAACTGCTTCAAATGTTCAAAGATCTGAAAAATCCTTAACAGCTTCACATGTCCAAAGGTCTCCTAAAAAGTCTTCAACTGGTTCAAATGTTAAAAAATCTCCTGAAAAGACCTCAACTAGCATTGTCCAAAATTCTCCTAAAAAGTCCTCATTTGCTCCAAATGTTCAAATATCTCCTAAAAAGTTCTCAACTACTAGCAATATCCAAAGTTCTTCTAAAAAATCATTGACTGTGAGCAATACAGAATTTAAGAACTTTGGTAAAGCAGACAAAGAAAAGAAGACCACTTTAAAACCTCAAAAGAAACAAGATGTTCCTCAAACTGAGAGACTAGATGCAGAAAAGGATGATGAAGAGAGCGATTTATcagatgatgaggaggaggaagagaaggAATACTTTGATGACAGCACAGAAGAACGTTTTCACAAACAGTCATCTCAGTCTGAAGACAGTGATGATGATGACTTCTTCATGGGCAAAGTGAGCAAATTCAAGAAGCGGAAAAGTAACCAATCTAAAGTTGTGGAGAAAAAGAGGGAACTTCCAAATGCTGACAAGGAGGTCACCAGCAAACCTCGACATGACAGCCTGGGCAAGTTAGAGTCTGTATTCTGCTCAACGTTGTCCAAATCCAACGTCTCTTCTCAGAAAGCAAAGTATGGGTCTCGGAATGATGGCCAGAGACCCCCTCGATTCCAAAACCAGAGGAAAGGTCCTGAGGGTCGGATGAAAGCTTCCCAGTATAAAGGCCAAGACCTTGGTTCTGACAAGAGGACTAGTTCTTTCACTTCTGAAAGACAGACTTTTAAAGCTGCTGGACAAATGCAAGCAGGGCCTTCAGGGGCAGGAAGGGGTAAGCCAAAGTTTGAAAATCGTCAGAACCAAAATTCCAAAGGTCCACCTGGAAAGATGTCAAATCAACCCCAGCAATCCCTTCATCCCTCATGGGAGGCCAGCAGGAAGAGGAAAGAGCAGCAGGCGCAAATCACAGCGTTCCAAGGaaaaaagatcagatttgatgatGATTAAAAGTGTCTGTTAATATCcatttgaaatataataatgtgtatggagtcaatctagggtcatatatacttgcaaaataaattttaaaaagtataaatttgcaaacaaaaaaagaagtattaagcaaaaaaaaaaaaaaaaaagcaaatctccaaaaatcgcaacgcaaaaattaaattttgagaaataaaatttatttttgctaacaaaataaacacctGCAAAAGGGAAAGTTATGCttagagaaataaaaatgaaacttgCACACAAAAaagaactgtaaataaaaattaagcagtgcaaaaaaaaaaaacatatttgctataaaaaaaaacaacaactgataCTGTATATGTACTGCCTTTACAAAACCTGTCCAGTCAATTggaatgctcattttgatttgccTTTTAGCCAACCGTGAGTTTATGATGCTGTTTTCACTGCCGTAAACTTCCAAGTTCCCCTGACTCTGTCCCCTTGTGAAATCAGATTCACAAAGTGAAATGTGCAGAAGAGTAAAGTGCAGtgaaaacagcatcgcaaactcaTGGTTGAACATACACAAGTATTTTTGTgcgtgtgttttttatttttattttttttgtgcactACTTGATTTTTGATAcagtttgttttatgtttgtaaatgtaatttttatttttcaaaacaaattttCCCTTTTgcaattctttgtttttgttagcaTAAAACAACtttctcaaaaataaattttcGCTTTGCGATTTTTGaagatttgcatttttttttttgcaaaaatttgCTTCATTGAACCTGCCTCCAATGAAgcaaaatgaatataatatatatgtaatatatatgtattacagttgcaaatagttttttttttttgcactgcttgatttttatttgcagttctttatttttgtttgaaatcctttttatttcacaaaacataattttctctttgtaatttttttgtgatttgtattattgcattttttttctttctttggtcaatttagtttttgtttgctaTTCTTCATTTTATACTGCGAGTAAATAAGGCTTTGTATTGATTCCAATGTGTTCCTTAAACTATTTTCTGTGATCAAAACAAGAAGATAAAACAGCTTTCTTACAGTTAAAGATTGTTCAAAGCTACTGTCAATTTTCTGTCATATCTCGCTCATTTCAGTTTTTATGTTGTATAATTAAAGAGTTCCAAGTA
>TCONS_00029330
atatcagcTTTCAGGAAGAACATAAAGATGCCTGCGGCACTTAACCTCAGCAATGAGGTGGTCAAGATGAGGGCGGAGGTTAAAAGAATAAAGGTGTTCCTCATCAGGAAACTCAGCCGTCAAATCTCAGCCCTGCAGAAGAAGAAAGGAAATGAGGCGAGCTTGGAGAAAAATGGCAGGCGAGCAGCGAGACTTCGAGAGGAGATCCGAGAACTGAAAGCTGTGGTGCCAGACAGTGTAACCAAGGCTGCCCTACAGAAAGACATTAGCTTTGAGAAAGTGTGCCGTGACAAAGAGGCAAGCCTAACTGACCGTGCCACTGCCCGCATCGCCACACATCCTGAGTTCAGCAAGAAGATCCAGAGCTTAAAAGCAGCCATCAAAGCTTTCAAAGAAGAAAGAATGAATGCGAGAAAAGCGGAAAAACAAGCAAAAGGCAGTGCAGAAAGTGACAGTTCACAGGACACCGATGAAGAGGATGATGATGGTTCAGAGAGATCAAACAACAGAGATGATGAAGATGGACTGAAAGAGGATGAGTATGACAAAAAGACAGATGAATTGATTGATAGCTCCTCACAGGAGACATTGAATAAACAGACTAACCAGTGTCAGGAGGAAGAAAGGTTGGATGAAGAGGGATCATCTGAAGCAGTGAGCATCTCAGAAGAGGTGATCAGGATGAGGAAGGAGGTAAAGAGGACGAGGGTGGCGATCATTAGTAAACTGGCTGAAGAAGTTGCTTTTCTAAAGAAGAAGAAAGGTGAGGAATATGAGGTGAAGGAAAGCCAAGAGAGAGCAGCAGTTCTTCTGAAAGAAATCCAGGCTTTAAGGAGCCTTAAACCAGATCAGGTGACCATGACAGCACTTCAGGAGAACATGGAGCTGGAGAAGATTTTGCTGGACAACGAGGCAAGCCCAATTGACAGAGCCATCGCACATATTGCAACACATTCCCGCTTCATCAACAAGCTTCAGAAGATCAAAGAAGAAAAGATTAAGGCTGCTGAAGCTGAGAAGAAAAAGACTGACAAACCGGACACGGTGCAGTCCAAGAATGAAGATGAGGAACTGGAAGAGGAAGATGAGGAGGAGgtagatgatgatgataatgatgatgatgatgacgatgacgaCAGCAGTGATGAAAGTGAAGAGAATTGTGATAAAGTAGGTGAAAAGTCAAATCGTGTTTTCAATCAGATTGATAAATCAGGTGTTGTGGAACCAGATACAAGTGCAGAACCTGATACTTTTGAAATGCCACAATCCAAAACTGATGTCATGGCTCCAAATGACCAAAACTTCTCTTCAACTGCTTCAAATGTTCAAAGATCTGAAAAATCCTTAACAGCTTCACATGTCCAAAGGTCTCCTAAAAAGTCTTCAACTGGTTCAAATGTTAAAAAATCTCCTGAAAAGACCTCAACTAGCATTGTCCAAAATTCTCCTAAAAAGTCCTCATTTGCTCCAAATGTTCAAATATCTCCTAAAAAGTTCTCAACTACTAGCAATATCCAAAGTTCTTCTAAAAAATCATTGACTGTGAGCAATACAGAATTTAAGAACTTTGGTAAAGCAGACAAAGAAAAGAAGACCACTTTAAAACCTCAAAAGAAACAAGATGTTCCTCAAACTGAGAGACTAGATGCAGAAAAGGATGATGAAGAGAGCGATTTATcagatgatgaggaggaggaagagaaggAATACTTTGATGACAGCACAGAAGAACGTTTTCACAAACAGTCATCTCAGTCTGAAGACAGTGATGATGATGACTTCTTCATGGGCAAAGTGAGCAAATTCAAGAAGCGGAAAAGTAACCAATCTAAAGTTGTGGAGAAAAAGAGGGAACTTCCAAATGCTGACAAGGAGGTCACCAGCAAACCTCGACATGACAGCCTGGGCAAGTTAGAGTCTGTATTCTGCTCAACGTTGTCCAAATCCAACGTCTCTTCTCAGAAAGCAAAGTATGGGTCTCGGAATGATGGCCAGAGACCCCCTCGATTCCAAAACCAGAGGAAAGGTCCTGAGGGTCGGATGAAAGCTTCCCAGTATAAAGGCCAAGACCTTGGTTCTGACAAGAGGACTAGTTCTTTCACTTCTGAAAGACAGACTTTTAAAGCTGCTGGACAAATGCAAGCAGGGCCTTCAGGGGCAGGAAGGGGTAAGCCAAAGTTTGAAAATCGTCAGAACCAAAATTCCAAAGGTCCACCTGGAAAGATGTCAAATCAACCCCAGCAATCCCTTCATCCCTCATGGGAGGCCAGCAGGAAGAGGAAAGAGCAGCAGGCGCAAATCACAGCGTTCCAAGGaaaaaagatcagatttgatgatGATTAA

Function

symbol description
srfbp1 Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of 90S preribosome. Predicted to be active in nucleus. Orthologous to human SRFBP1 (serum response factor binding protein 1).

GO:

id name namespace
GO:0030490 maturation of SSU-rRNA biological_process
GO:0030686 90S preribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1991 Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of 90S preribosome. Predicted to be active in nucleus. Orthologous to human SRFBP1 (serum response factor binding protein 1).

Ensembl:

ensembl_id ENSDARG00000075323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029329 False 3640 mRNA 0.38 3 29296191 29303788
TCONS_00029330 True 2346 mRNA 0.43 2 29297402 29302249

Neighbor

gene id symbol gene type direction distance location
XLOC_014861 e2f3 coding downstream 1734 29274385 ~ 29294457 (-)
XLOC_014860 NA coding downstream 25165 29202043 ~ 29271026 (-)
XLOC_014859 NA coding downstream 108055 29186529 ~ 29188136 (-)
XLOC_014858 NA coding downstream 173966 29103407 ~ 29122225 (-)
XLOC_014857 NA coding downstream 265392 28922544 ~ 29030799 (-)
XLOC_014863 fndc5b coding upstream 79698 29383486 ~ 29437109 (-)
XLOC_014864 NA coding upstream 446540 29750328 ~ 29796288 (-)
XLOC_014865 CU861666.1 coding upstream 481307 29785095 ~ 29785212 (-)
XLOC_014866 eif3i coding upstream 518712 29822500 ~ 29832876 (-)
XLOC_014867 txlna coding upstream 530652 29834440 ~ 29853435 (-)
XLOC_014711 CR382300.3 misc downstream 9567436 19728690 ~ 19728755 (-)
XLOC_014856 NA non-coding downstream 471801 28817621 ~ 28824390 (-)
XLOC_014869 NA non-coding upstream 610561 29914349 ~ 29915967 (-)
XLOC_014870 BX547939.1 non-coding upstream 843582 30147370 ~ 30300852 (-)
XLOC_014871 NA non-coding upstream 1009057 30312845 ~ 30316143 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08969979_08973590 NA coding CI01000054 null 8969979 ~ 8973666 (+)