XLOC_014867 (txlna)


Basic Information

Item Value
gene id XLOC_014867
gene name txlna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29834440 ~ 29853435 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029337
CCACGATCCGTCCAATCATCTTAGAGTGTTACCCTGGCATTTCCTGTGTCAGTTGGAATCGGCAGTGGGAAGGGTAAAGAGTGGTGACAAACATAAGAAGTGGTTTCTTAGACCAAAGTAAGACACtgctattattttaaacattattacttTAAAGCGCGAACACGTTAAATGTACATGTTTAGCGAAATATTGACAAATTAGAGCGCGTCAATTCAGTATTCGGATGTTTAACTGTGCGTTTTGTTAGCCACGACAGCTAAACTAGTCGAGCGAGATGGTACACAGCCACAGCTCTCCTCTCAGTTATacttatatacatatttacagcTATTATCAATCAGGTTAAAGTAAAACATGTTCTTTGTTTTGCACGTCTGTTAGTAATAGTTTGACAACTGCACGAAGGACTGAATGATTGACAATCGTCTGATAGCTGTAAACGTGATCTCTAGTGTTTAGTGATTAGCGTGTTTTTACCGTTGTTACCATGGTGAGTTAAAGAGTCAACTGTCGGCCTGGTTTGTTTGGTGAATTCTTTTACAAAAAGTGATTAGTAATGGCGAGGCTGAATTGAAACCGAAACCTTCAAGCTGTTTTATGATGAAGCGTGTCGTCTTGTTAGTCTTTAACTTGTGCATTGTGTGTTTTAGTATTTGCTTATAAATTAGCCATGCAGAGGCAAATGGAGGATCCTGCAGCTGATAGCAGTGCAGATGATACTGAGGAGAGCACGCCTGCATCTGAGATGACCAACAGCCCTAAAGAAGCTGAAACACAGCCGGACGGCTCACCAGCCAACAAAGATGAAGGCTTGGCAGAGGCTGGGGCAATTTCTTCTTGTGATATGGCTGAGGAGCTGAGCAGACAGCTGGAGGACATCCTCAGCACCTACTGTCATGAGGATGGCAGTGTTGGCAGCAAGAATGCCGCCGTGACCAATGGTGTGGAAGTCAATGGGCTGTCTGAGAAGGAAAACGGCAAGCAGGAGGAAGCCAAACTGAATGGCAACGGATGTGTAGAGAAAGATCAGAAGAAGCTGCAGGAGAAGAAGAAAGTGAAGGGACTGGGGAAGGAGATAACTCTTTTAATGCAGACCCTCAACACACTGAGCACTCCAGAGGAGAAGCTGGGTGGTCTCTGCAAGAAGTATGCTGAGCTGTTAGAGGAGCACCGTAATGCTCAGAAACAGATGCGGGTGTTGCAGAAGAAGCAGACGCAGCTCATTCAGGAGAAGGACCATCTAAGAAATGAGCACAGCAAGGCCATCCTGGCACGCAGCAAACTGGAAAGTCTCTGTCGAGAATTGCAGAGGCACAACCGCACACTTAAGGAGGATGGTGTGCAACGTGCCCGATTGGAGGAGGAGAAAAGGAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATCCAGGCTCAGATGGAGCAGCACAATGAGCGGAATGCAAACCTGAGACAGGAGAACATGGAGCTGGCTGACAAACTAAAGAAGCTTATTGAGCAGTACGAGCTCCGAGAGGAGcatATTGACAAGGTGTTCAAACAGAAAGATCTGCAACAGCAGCTAGTAGATGCAAAGCTTCATCAGGCACAGGGTCTGCTCAAAGACTCAGAGGACCGGCATCAGAAAGAGAAGGACTTTCTCCTGAAAGAGGCAGCAGAGTCTCAGAGGATGTATGAGCTCATGAAACAACAGGAAGTTCATCTGAAACAGCAGCTTTCGTTGTACACCGAGAAGTTTGAAGAGTTCCAAAACACACTTTCCAAAAGCAACGAGGTCTTTACTACATTCAAACAAGAGATGGAAAAGATGACAAAGAAGATCAAGAAGCTGGAGAAGGAAACGACCATGTACAGATCACGATGGGAAAGCAGTAACAAAGCCCTGCTGGAAATGGCAGAAGAGAAAACACTAAAAGACAAGGATTTTGAAAGCCTGCAGGTGAAGGTGCAGCGACTGGAGAAGCTCTGTCGCGCGCTACAGATAGAGCGCAACGAGTTAAGTAAGAAAGTTCAGAGTTTTTCTACAGGTGCCGAAAGTCGGCTGGACACAGAGTCGGGGTCACCTCCTGAAGCCACAGACTCTGAGGAGGGCAGCCCCGTCCACCAGAACACCCCAGAGACTCCACAAAGCGCCTGTAGCCCGGCGTGCCACTGCGGACCAGACCTGGAGGCCGAGACTCGCAGAGAGGTGTGTTCAGCCCAGGATTGAGTCTTGCTGTCTCCGGTGGGCCAGGACACACACAATCCTTCCCGCCTCCCCCCCACCACAAACCTCCACGAGCAGGTGGCGTCTTGTTGTTTTTATGCGTCCACGGACCTGCTGACTCGTCTGCTCTTGGGGGTTTTCATCGTGTCAGGGAAGATTGTGCCTTCAAACATGATTCCTATGCTGCGTTTCTACTCTTTGGTTTTTATGTGGCTCGCTTTAATTCCATTATTTTCATTTAGAAAGGGCATGGGTGTTGCTGCTGTCTCGGAATGCTCAGTGTTTGTCCACTAAATGCTTGTTTTTCTTTGTCAGTTTGGTGTTAAGAATATTAACAGACTGCTGAAATTGAAGAAAATAGTTTGTGAGgcagttttgttttctttctttaggcagttttatttaatttctggccTTAAGTTGTCATGTCAGGTAAAATCTGCTGGTATACTTTCCCTTTTTTTTAGTTTGTCGTCCTTAAATCAGTTTGCACCAAACGAAGAATGTATGGTTTGTTATCCATCACTTGTCGGAGTTTAGAATTGTAGACGTACATTTAAGACTAACATTATTTTAAGTTGAAGGCTCAGCTAATCTGAACCCAGGATTCGCTTTTGCACAACACTTGAATTTTTCACATGTTTCGTTTAACTTAAGTTTACACCACTAGTATTTTTGGTTTATATACTGTAGATGCATTCCTTTAACTCATTCCATTAACTTCTAATTGGTAACATGCACTTAAATTATGTCATGACCACTTTTTCAGTCTGCGATTTCACAATTTTCTGCTTACATTTGTGTTTATGGCGtacaaattgtatttaatatattcatatagTTAAAAAAGGAAGAATACATACATCCCCAAGTCTAGTTAGGTCAGAAGATTTAAAAACACTATGCAATTCTAGCTCTGTTCATGTCATCTTGGTGTTTAGCAGGTGAGCAAAGCACTGACATGCTGAGAAATGAATGTAAGTTCCACACAAAGTGACTTAGTCCAGTGATGTCAGTCAATTCCAGCACTCTTGGATTTTTTGAGTTTGTTTTCCAGTATGTTTTAGCACACTTGCAGTAGCTCTCTGAGCAGATTAGTAAAATGTTGGTGTAGTGTTGAGCATGAAGTGCATCCAGTCATCAGTTGGCCATGTAAAATCTTGCGCATTCCATTCCAAGTCATGGTATCTGCTTCAATTGAGATTCTTTTGTTTCAAAAAGTTTGTCAACTGGTATTCGTGAGTCGTTTTATCATTTGCTCTTCATTCAAATTTGACATTTCCATTATAAAAGAAGGTACCAAAGATCTGTGTTGATTTCACACCCTGTATACATTTATTTGCGAATTAAAATACTAAAGAAATTCAaatgatttgtgtgttttttccccCTGTTTGTAACAAACAAGTAAAATCAAGTGTTGGTATTATTTATGGAATGTCTAATATGGAATCCCCAGTTGTTGGGTTTATAacattttaccatgatttacaaaAGACACACTTACAGTATGTTATTCAGTTTCACAGTTAATATAGCAAAAAAAGatcttgtcaggcatatttataacaaaatatttttaaggaTCATTGTGCAGCCCCCAAATAGAAAAggattgtcattttaaatctataCTTTCTATCTTTATGCTTTGCACCTGTCCTTCAAACCACTAGTTTCATCCATTTATaagcaatattcattcattttctttatggtTTAGTCTCTTTCATAATCAAGAGTCACCACgttggaatgaacagccaacttatgcagcatttgttttacgctgCGGGTTCTCTTCCAGCTgccacactgggaaacacccatacacactctttcacttGTACACTGcacccaatttagtttattcaattcacctataccgcatgtctttggactgtgggggaaacccgagcactgggaggaaacccatgcgaacatggggagaacatgcaaacttcacacagaaatgccaattgacccagccagggctcgaaccagcaacccatttttgaaaaatcatttGTAAATCACATATTTATAAGCACATGTCAGAATGGGACTGctgttattattaaatgtatgtttcgCTGGATGACGATGAAACATTGTTTCTggtattttaaccctttaactgtcaccaAGAAAATTTTTTGGATTTCTTAACTCTTTCTTAAAACACATAGAACACCTTTTTTCGAAGTATGCCATCAAATATTTCAGATCTTCATTTAACTTGttttcttattgttttttttttttgtttggtttgtttattgtttttttcacaataaaaccaaaatcaagtgtagaagTGCAACAGGAGGATtatgtttgttagattttttttgttgttgttgttgttgttgtttttgtaaacCAATGTTTTGTAGTGTAAACCATTTAAAAGTCATTCttcaaaacagtaaaaacatggtcaaccgtttGCTAGAGGTGCAGTCAATATGCTAAAGGGCATTTAAAATACTTTCACTGTATATCATTCTTTTAACAAGTTTAGTTTGTTGCGAGCACAAAAAGGTTGTCTCATCTTTGACCCATGTGCTTTGTTATATAATAAAGTGTTTAGTATAAATTCTTAAGTGACTGTTTTAATTAACAGCGGTGTTTAATGACATCTCTGTAACAAACATAAATCATTTAGTcgtttcttttaataaaaaaataaatatttaccaaTCAATGGTTCAGTAATGGAATAGACCATGTCAACCAGCTTTTTAATGAGGAAGGTCTCACAAAATTGAAAAGTCCAGTAACTCTTAAAGAGTTTGCAATAACTACAGGTGCTATTCCCTCTGGATTAcacatgcttttttaaaaaaaacaatacagtatcACCAGGACAAGAAACATACATGCAGTTTGTAGACCTTTAATATGTATAATCTGTTAAATCTCTAAATTGctgttatctttttattttgcccTCTTCACTCTCAATTTCTTTATGTATAATATATTTCCTCAGATCAGATAAGCTGTCgatctttctttatttttgtttgatttctgtagggttttttctcttgttttttcttcattttctttctttattggCACCATTGTAAATATTCCAGTGTTTAATATTGTAAATGATGTGTACCAAATatatctttctgttaaacaatcaattgtaaaaaaaaaaaaaaacacaaatacaaacaaacaaataaataattgtttcatTCAAGAAACAAAACTGGGATGGCACTTCTCCCAGATTTTATTTATCACGAGGTATACGACAAAGGTGTCCATTGtctccttatttatttttattagattcCCAATTTTCACTTCCTTTATATCTAATAGTGGTCTTAATGGTATTCGTATAGCTGACAAACAAATTCTCATCAG
>TCONS_00029338
CTGGCATTTCCTGTGTCAGTTGGAATCGGCAGTGGGAAGGGTAAAGAGTGGTGACAAACATAAGAAGTGGTTTCTTAGACCAAATATTTGCTTATAAATTAGCCATGCAGAGGCAAATGGAGGATCCTGCAGCTGATAGCAGTGCAGATGATACTGAGGAGAGCACGCCTGCATCTGAGATGACCAACAGCCCTAAAGAAGCTGAAACACAGCCGGACGGCTCACCAGCCAACAAAGATGAAGGCTTGGCAGAGGCTGGGGCAATTTCTTCTTGTGATATGGCTGAGGAGCTGAGCAGACAGCTGGAGGACATCCTCAGCACCTACTGTCATGAGGATGGCAGTGTTGGCAGCAAGAATGCCGCCGTGACCAATGGTGTGGAAGTCAATGGGCTGTCTGAGAAGGAAAACGGCAAGCAGGAGGAAGCCAAACTGAATGGCAACGGATGTGTAGAGAAAGATCAGAAGAAGCTGCAGGAGAAGAAGAAAGTGAAGGGACTGGGGAAGGAGATAACTCTTTTAATGCAGACCCTCAACACACTGAGCACTCCAGAGGAGAAGCTGGGTGGTCTCTGCAAGAAGTATGCTGAGCTGTTAGAGGAGCACCGTAATGCTCAGAAACAGATGCGGGTGTTGCAGAAGAAGCAGACGCAGCTCATTCAGGAGAAGGACCATCTAAGAAATGAGCACAGCAAGGCCATCCTGGCACGCAGCAAACTGGAAAGTCTCTGTCGAGAATTGCAGAGGCACAACCGCACACTTAAGGAGGATGGTGTGCAACGTGCCCGATTGGAGGAGGAGAAAAGGAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATCCAGGCTCAGATGGAGCAGCACAATGAGCGGAATGCAAACCTGAGACAGGAGAACATGGAGCTGGCTGACAAACTAAAGAAGCTTATTGAGCAGTACGAGCTCCGAGAGGAGcatATTGACAAGGTGTTCAAACAGAAAGATCTGCAACAGCAGCTAGTAGATGCAAAGCTTCATCAGGCACAGGGTCTGCTCAAAGACTCAGAGGACCGGCATCAGAAAGAGAAGGACTTTCTCCTGAAAGAGGCAGCAGAGTCTCAGAGGATGTATGAGCTCATGAAACAACAGGAAGTTCATCTGAAACAGCAGCTTTCGTTGTACACCGAGAAGTTTGAAGAGTTCCAAAACACACTTTCCAAAAGCAACGAGGTCTTTACTACATTCAAACAAGAGATGGAAAAGATGACAAAGAAGATCAAGAAGCTGGAGAAGGAAACGACCATGTACAGATCACGATGGGAAAGCAGTAACAAAGCCCTGCTGGAAATGGCAGAAGAGAAAACACTAAAAGACAAGGATTTTGAAAGCCTGCAGGTGAAGGTGCAGCGACTGGAGAAGCTCTGTCGCGCGCTACAGATAGAGCGCAACGAGTTAAGTAAGAAAGTTCAGAGTTTTTCTACAGGTGCCGAAAGTCGGCTGGACACAGAGTCGGGGTCACCTCCTGAAGCCACAGACTCTGAGGAGGGCAGCCCCGTCCACCAGAACACCCCAGAGACTCCACAAAGCGCCTGTAGCCCGGCGTGCCACTGCGGACCAGACCTGGAGGCCGAGACTCGCAGAGAGGTGTGTTCAGCCCAGGATTGAGTCTTGCTGTCTCCGGTGGGCCAGGACACACACAATCCTTCCCGCCTCCCCCCCACCACAAACCTCCACGAGCAGGTGGCGTCTTGTTGTTTTTATGCGTCCACGGACCTGCTGACTCGTCTGCTCTTGGGGGTTTTCATCGTGTCAGGGAAGATTGTGCCTTCAAACATGATTCCTATGCTGCGTTTCTACTCTTTGGTTTTTATGTGGCTCGCTTTAATTCCATTATTTTCATTTAGAAAGGGCATGGGTGTTGCTGCTGTCTCGGAATGCTCAGTGTTTGTCCACTAAATGCTTGTTTTTCTTTGTCAGTTTGGTGTTAAGAATATTAACAGACTGCTGAAATTGAAGAAAATAGTTTGTGAGgcagttttgttttctttctttaggcagttttatttaatttctggccTTAAGTTGTCATGTCAGGTAAAATCTGCTGGTATACTTTCCCTTTTTTTTAGTTTGTCGTCCTTAAATCAGTTTGCACCAAACGAAGAATGTATGGTTTGTTATCCATCACTTGTCGGAGTTTAGAATTGTAGACGTACATTTAAGACTAACATTATTTTAAGTTGAAGGCTCAGCTAATCTGAACCCAGGATTCGCTTTTGCACAACACTTGAATTTTTCACATGTTTCGTTTAACTTAAGTTTACACCACTAGTATTTTTGGTTTATATACTGTAGATGCATTCCTTTAACTCATTCCATTAACTTCTAATTGGTAACATGCACTTAAATTATGTCATGACCACTTTTTCAGTCTGCGATTTCACAATTTTCTGCTTACATTTGTGTTTATGGCGtacaaattgtatttaatatattcatatagTTAAAAAAGGAAGAATACATACATCCCCAAGTCTAGTTAGGTCAGAAGATTTAAAAACACTATGCAATTCTAGCTCTGTTCATGTCATCTTGGTGTTTAGCAGGTGAGCAAAGCACTGACATGCTGAGAAATGAATGTAAGTTCCACACAAAGTGACTTAGTCCAGTGATGTCAGTCAATTCCAGCACTCTTGGATTTTTTGAGTTTGTTTTCCAGTATGTTTTAGCACACTTGCAGTAGCTCTCTGAGCAGATTAGTAAAATGTTGGTGTAGTGTTGAGCATGAAGTGCATCCAGTCATCAGTTGGCCATGTAAAATCTTGCGCATTCCATTCCAAGTCATGGTATCTGCTTCAATTGAGATTCTTTTGTTTCAAAAAGTTTGTCAACTGGTATTCGTGAGTCGTTTTATCATTTGCTCTTCATTCAAATTTGACATTTCCATTATAAAAGAAGGTACCAAAGATCTGTGTTGATTTCACACCCTGTATACATTTATTTGCGAATTAAAATACTAAAGAAATTCAaa

Function

symbol description
txlna Predicted to enable syntaxin binding activity. Orthologous to human TXLNA (taxilin alpha).

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2900 Predicted to enable syntaxin binding activity. Orthologous to human TXLNA (taxilin alpha).

Ensembl:

ensembl_id ENSDARG00000077037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029337 False 5602 mRNA 0.39 10 29834440 29853435
TCONS_00029338 True 3015 mRNA 0.44 11 29836458 29853402

Neighbor

gene id symbol gene type direction distance location
XLOC_014866 eif3i coding downstream 1564 29822500 ~ 29832876 (-)
XLOC_014864 NA coding downstream 38152 29750328 ~ 29796288 (-)
XLOC_014865 CU861666.1 coding downstream 49228 29785095 ~ 29785212 (-)
XLOC_014863 fndc5b coding downstream 397331 29383486 ~ 29437109 (-)
XLOC_014862 srfbp1 coding downstream 530652 29296191 ~ 29303788 (-)
XLOC_014868 kpna6 coding upstream 8424 29861859 ~ 29887629 (-)
XLOC_014869 NA coding upstream 60914 29914349 ~ 29915967 (-)
XLOC_014870 BX547939.1 coding upstream 293935 30147370 ~ 30300852 (-)
XLOC_014871 NA coding upstream 459410 30312845 ~ 30316143 (-)
XLOC_014872 NA coding upstream 494074 30347509 ~ 30359059 (-)
XLOC_014711 CR382300.3 misc downstream 10105685 19728690 ~ 19728755 (-)
XLOC_014860 NA non-coding downstream 563414 29202043 ~ 29271026 (-)
XLOC_014859 NA non-coding downstream 646304 29186529 ~ 29188136 (-)
XLOC_014858 NA non-coding downstream 712215 29103407 ~ 29122225 (-)
XLOC_014876 NA non-coding upstream 616535 30469970 ~ 30470501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08695322_08702750 TXLNA coding CI01000054 null 8695322 ~ 8703309 (+)