XLOC_014868 (kpna6)


Basic Information

Item Value
gene id XLOC_014868
gene name kpna6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29861859 ~ 29887629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029339
CCAACATCACAGCAGGCAACAGAGCACAGATTCAGGCCGTAATAGATGCAAACATCTTTCCGGTATTGATAGAAATCCTGCAGAAGGCAGAATTCCGCACCAGGAAGGAAGCAGCGTGGGCGATCACTAATGCCACGTCAGGTGGCACGCCCGAGCAGATCAGGTATCTGGTGAATTTGGGCTGCATTAAACCTCTCTGTGATCTGTTGACTGTGATGGACTCTAAGATCGTGCTGGTGGCTTTGAACGGTCTGGAGAATATTCTAAGACTAGGCGAGCAGGAGGCCAAACAGAACGGCAGTGGACTCAACCCTTACTGTAGTCTCATAGAGGAAGCCTACGGTTTGGACAAAATCGAGTTCCTTCAGAGTCACGAAAATCAGGAGATCTATCAGAAAGCCTTTGACCTCATCGAGCATTACTTTGGAGTGGAGGAGGAGGATGCTAATCTGGTTCCACAGGTGGACGAGAATCAGCAGCAGTTCCTTTTCCCCCAGCAGGAGGCCCCGATGGAAGGCTTCCAGCTATAACCAGCCTTCTGACTCTTTCCGGCCGCCCACTGACCTTTACACCCTTCCCTGCACCCCATACCCGAATTGCCCGTACTGTGACTGACTTGACTTTACCGACGATATGAATGAGTGACGGACACACAAACTGAACATgtcacacaaacatatacatgaACAATTCTGAACaaatgtttaagattttttttttggtccagatacaaaataaaatgataaaac
>TCONS_00029340
ATTGTTTGTGAGGAGCAAAATCGAGTGTTAAGATTACAGCGTTGATAAAACCAGTCATCAAAGCGTATATAACTCAAGAAAGAACCATGGAGCCTTCAGGAAGTCCTGCGAAGGATAATTTCAGGATGAACCGCTACAAGAACAAAGCACTTAACCTGGAGGAGATGCGTCGGAGAAGAGAGGAGGAAGGCATTCAGCTGAGGAAACAGAAACGAGAGCAACAGCTGTTTAAGAGAAGAAATGTGGAGCTGCTGGGTGAAGAAGGGGGAATGTTTGACAGTCCTCTCATGGATTCCTACGTCTCCTCCACCACAGCCCCAGATGGAGTAATTACAAGAGACATGGTTGAAATGCTCTTCTCAGAAGACCCGGAACTACAGCTGGTCACGACACAGAGGTTCAGAAAATTACTTTCCAAAGAACCAAATCCACCTATTGATGAAGTGATAAGCACACCAGGAGTTGTTAATAGGTTTGTTGAGTTCCTTCAGAAGAGTACAAATTGCACATTACAGTTCGAGGCCGCCTGGGCACTGACCAACATTGCATCTGGAACATCTCAGCAGACAAAGTTTGTGATCGAGGCTGGTGCCGTGCCTGTCTTTATTGAGCTTCTCAACTCAGATTTTGAAGATGTTCAAGAGCAGGCTGTTTGGGCTTTAGGGAACATTGCGGGAGACAGTGCTGTGTGCAGAGATTATGTGCTAAACTGTAATATCCTCCCACCTCTACTAGTGCTGCTGACCAAATCAACTCGACTAACAATGACTAGGAATGCTGTGTGGGCCTTGTCCAACCTGTGCAGAGGCAAAAGTCCACCCCCCGACTTTGAGAAGGTGTCTCCATGCCTGCCTGTTCTGTCCCGTCTTTTGTTCAGCAGTGATTCAGACCTGCTGGCTGATGCCTGTTGGGCTCTCTCCTATCTCTCTGATGGGCCCAATGAGAAGATCCAGGCAGTAATTGATTCAGGGGTCTGCCGGAGGCTTGTAGAGCTTCTCATGCACTCTGATTACAAGGTGGCTTCTCCTTCTCTGAGGGCTGTTGGAAACATTGTTACAGGAGATGACATTCAGACCCAGGTGGTGTTGAACTGCTCCGCTCTGCCGTGCCTCCTGCACCTGCTTAGTAGCGCCAAGGAATCCATCAGGAAGGAGGCCTGCTGGACCATCTCCAACATCACAGCAGGCAACAGAGCACAGATTCAGGCCGTAATAGATGCAAACATCTTTCCGGTATTGATAGAAATCCTGCAGAAGGCAGAATTCCGCACCAGGAAGGAAGCAGCGTGGGCGATCACTAATGCCACGTCAGGTGGCACGCCCGAGCAGATCAGGTATCTGGTGAATTTGGGCTGCATTAAACCTCTCTGTGATCTGTTGACTGTGATGGACTCTAAGATCGTGCTGGTGGCTTTGAACGGTCTGGAGAATATTCTAAGACTAGGCGAGCAGGAGGCCAAACAGAACGGCAGTGGACTCAACCCTTACTGTAGTCTCATAGAGGAAGCCTACGGTTTGGACAAAATCGAGTTCCTTCAGAGTCACGAAAATCAGGAGATCTATCAGAAAGCCTTTGACCTCATCGAGCATTACTTTGGAGTGGAGGAGGAGGATGCTAATCTGGTTCCACAGGTGGACGAGAATCAGCAGCAGTTCCTTTTCCCCCAGCAGGAGGCCCCGATGGAAGGCTTCCAGCTATAACCAGCCTTCTGACTCTTTCCGGCCGCCCACTGACCTTTACACCCTTCCCTGCACCCCATACCCGGTACTAAAAACATGCATCGGAAACACTCAGAGCGCAGACACGGACATCTGGGTGAACTAAATTAATCGACCCCTGACCCAGACTGATTCATGTAGTTCTGTTTAATACAGGGGAAACATATCCACTATCCCGTCACACCCAAGAGAAAGCTCAATTTTAGTTTCcttcattgttttttttccccgTCTCAATGATGCAGCTAAATAATC

Function

symbol description
kpna6 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-626 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

Ensembl:

ensembl_id ENSDARG00000044980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029339 False 749 nonsense_mediated_decay 0.48 5 29861859 29873115
TCONS_00029340 True 1973 mRNA 0.49 14 29866489 29887629

Neighbor

gene id symbol gene type direction distance location
XLOC_014867 txlna coding downstream 8424 29834440 ~ 29853435 (-)
XLOC_014866 eif3i coding downstream 28983 29822500 ~ 29832876 (-)
XLOC_014864 NA coding downstream 65571 29750328 ~ 29796288 (-)
XLOC_014865 CU861666.1 coding downstream 76647 29785095 ~ 29785212 (-)
XLOC_014863 fndc5b coding downstream 424750 29383486 ~ 29437109 (-)
XLOC_014869 NA coding upstream 26720 29914349 ~ 29915967 (-)
XLOC_014870 BX547939.1 coding upstream 259741 30147370 ~ 30300852 (-)
XLOC_014871 NA coding upstream 425216 30312845 ~ 30316143 (-)
XLOC_014872 NA coding upstream 459880 30347509 ~ 30359059 (-)
XLOC_014873 agr2 coding upstream 512743 30400372 ~ 30404096 (-)
XLOC_014711 CR382300.3 misc downstream 10133104 19728690 ~ 19728755 (-)
XLOC_014860 NA non-coding downstream 590833 29202043 ~ 29271026 (-)
XLOC_014859 NA non-coding downstream 673723 29186529 ~ 29188136 (-)
XLOC_014858 NA non-coding downstream 739634 29103407 ~ 29122225 (-)
XLOC_014876 NA non-coding upstream 582341 30469970 ~ 30470501 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08675009_08686170 KPNA6 coding CI01000054 null 8675009 ~ 8686679 (+)
bowfin (Amia calva) AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding CM030133.1 CM030133.1 8109323 ~ 8120492 (-)