XLOC_014871


Basic Information

Item Value
gene id XLOC_014871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30312845 ~ 30316143 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030290
cacagtgtaaatgcacagtacagttacaattttattgccacattagatcattacaataacatgatatatgccttcagtgatttcctgaatacaaatacaaaacagaacacaactggaataactacagcagtcatgatCGTTTGTTCTCATGCggagcaagagattgcgatgacatatgtgtgcaggtgctgtagtggtgtcccattttttaggggtacattttgaagccctccCTCTTCACACTTTGTtccaagggccaaggggaaagggtaggggtgaaaaaatagaattgggatcggGCCTAAGTCTATGTGTAAATAAATGCCACACTGTTATACACcagtgtataataataacaatgtattttcattttgtttatatGGAATGAGCATTACAAACACTGTGGTAAATTTCTATTTTTAACAAGTACCAGAAAGGTCATACAGTTCAGAACAACATGAGTTTCTCCACTTTAAATTTGAGCAGTGCTTATTTCCGATTCTTTCATTTAtagcttaaaaacaaatgttatctCATGCATTTCAAAAACACAGCATAGTAGAAATGTGCCATGTACTGTGAACTTTACACCACCATTTGAAGCCTCTCTCTGAGACTGAAACTATCAAAGTAAAAATGAAACATGGCGTTGTTTTAAAAAGCCAAATGGTTGTGCTGTTAAATGTTTAACCCGATGCGAGTCTTCCGGCAGTGTAATCTTGAAAACATTTCTCTCCAGTCGTGTTTAGCACCCTGTACCAGAGACCCAAGAGTGGGAGAGTGTGTGTGATAATGCACTTCTTGTGTTCCCTTGACTTGCTGTTTCCACTCTTTCGGGGTGGTGTTACTATGACAGGCGTACTGAAGTATTTAAACTGATTTCCTCAAGTCCGTACTTACTTCATTACTGCTGGCATGGTGACATGATGTAGCGTAATGAAGCCAGCCTTGGTGCGGAGTCCTCATGTCTCCCTCCAGGCCTGATTCTGGTGTCACTGATGTCTCTAGCTGTGTGCCAAAGCCTAGCTTAGCGTCTACACATGGAGCTGACTTCGAACTGAAATAAAACCTCTTAAAGTGTCTGATTTAGAGTGGTGAAATTTAGTGTGGATCTTGTGCATTGCAATCTGAAAAACAGAGCTGTGTGTTAGAATGGTGTTAAACTAATTATATCTTAGCCTACTCTAAGAAAGCACACACTTGTATATGGTAGAACTATTTGAATtagattttaaaagtatttttttatattgagtATAAAATTCATATTTGGATTGAATATTTATTCCTACTTttccatttttttcttatttttttatattattattttaatgttaattaatgttagtttttgatgtttcatttttttttcagacactCTTACTTTAAAGTTTCATTCATCTGATACTGTTTTTCATTTTCTGTGTTTAGTTCCTGTTTTGTTGGTTTCTAGGggtgtttctcaattccaaaacgcagagaacggacttgtgttcttgtggagaccagtcttgctaggtgtcctcagaagaacgaactcgggagaccacgagaacagagataGCGTCCTGTgaaaaatgagatgctgcgttcttcctgatggtcacgtgaccttcacgagttttaaatgGTCAATTCTGCTCTGCTTTTTAAATCCTCCAACATACGCAACAAGACAAACGTTGGTAAGctatacgttcctctggctacataattcgcgatctctggaaatgtataaagggcaacgttttcagaatgggccTATTTTGCAACTATCAATGTCTTACTACATGAGTGTATGTGCACATATAAATATGTCTTTACAAAATGACATTACCAACAACTTGCTTGGCTGTACAGTATTAATAATTTTTGTCGAAAAAGATGTGCTCTTAAATGATTTAGGCAACGTATTGCCTGTTTTTATACTTCAAAGTATGGTTTCTTTCATATGTTGTCATCTGTTGCTTTGGTTACTGATTACGTGTCACACCTGTGCCTTATTTAGCTGTCGTCTTTCATGCCATATGTTTTAGTCCAGTTTGTTGGTTCTTGTCATGTTTATTTTGGTTTACATTGATTGAAGATTACAATTTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030290 True 2099 lncRNA 0.37 2 30312845 30316143

Neighbor

gene id symbol gene type direction distance location
XLOC_014870 BX547939.1 coding downstream 11993 30147370 ~ 30300852 (-)
XLOC_014869 NA coding downstream 396878 29914349 ~ 29915967 (-)
XLOC_014868 kpna6 coding downstream 425216 29861859 ~ 29887629 (-)
XLOC_014867 txlna coding downstream 459410 29834440 ~ 29853435 (-)
XLOC_014866 eif3i coding downstream 479969 29822500 ~ 29832876 (-)
XLOC_014872 NA coding upstream 31366 30347509 ~ 30359059 (-)
XLOC_014873 agr2 coding upstream 84229 30400372 ~ 30404096 (-)
XLOC_014874 ppp1r10 coding upstream 92174 30408317 ~ 30422239 (-)
XLOC_014875 abcf1 coding upstream 112770 30428913 ~ 30447743 (-)
XLOC_014876 NA coding upstream 153827 30469970 ~ 30470501 (-)
XLOC_014711 CR382300.3 misc downstream 10584090 19728690 ~ 19728755 (-)
XLOC_014864 NA non-coding downstream 516557 29750328 ~ 29796288 (-)
XLOC_014865 CU861666.1 non-coding downstream 527633 29785095 ~ 29785212 (-)
XLOC_014860 NA non-coding downstream 1041819 29202043 ~ 29271026 (-)
XLOC_014879 NA non-coding upstream 276176 30592319 ~ 30623732 (-)
XLOC_014880 NA non-coding upstream 404869 30721012 ~ 30722504 (-)
XLOC_014883 NA non-coding upstream 515047 30831190 ~ 30835097 (-)

Expression


Co-expression Network