XLOC_014875 (abcf1)


Basic Information

Item Value
gene id XLOC_014875
gene name abcf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30428913 ~ 30447743 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029351
GCCGCATGTGCTGTGAACTGAGCTCCAGTGTGCTCGTGTTCATTGTCAGCTGTAAAACATCCCGCAGTCTCCTTTAACACATTGGCTTTTCATTCTTAGCAAAAGAAAAGGTTAAAAGAAAGATGCCTAAGAAGTCAAAAGAAAAGGCTGAGTGGGAGGGTGATGATGAACCACAAACAGtagaCAAACATGTCAAAAAAGGCAAGAAGGATAAGAAAGACAAGAAGAGTTTTTTTGAGGAGCTGGCATCAGAGAATAAACCAGAAAAAGAACAGCCACCAGTGAAAGAGGTGCAAGGAAAGCAGcctcagaagaagaagaaagacagGCGGAAAGGAAAACCAGGAgacgatgaagatgatgatgaagattcaGAGGTCATGCAGCGTCTCAAGAAACTGTCAGTCCAGGCTagtgatgaggaggaggaagaagaagTTGTTGTTCCAGCCAAAGGAGGAAAGAGAAACAAAGGTGGCAATATATTTGCTGCACTGAGCCAGGGGCAgagtgatgatgaagatgatgaagctggtggtgatgataatgatgatgatgatgacaaaccCAGAAGCAAGAAGAGCTCTAAGGAAGTTGAGAAGGTAGCCAAGGGAAAGAAAAAAGATAAGCCTAAACCTAAGCCAATAAAGGAGGCCTCAGAGGACGAGCAAGATGAAGGTGCAGAGaaaaaagatgaaaatgaaaagaaaggaGGGAAAAAGGGCAAGAAAGCTGCTGCAGCTGCTAAACCATCTAAGGAGGAAGATGATATTGAAGAGAAAGAACAAGAGAAGTCCCAGAAAAAGGGCAAGAAGGAACCACCCAAGAAAGGGAAACCTGCTCGTCCTCCTCCgagtgatgatgatgaagaggaggaagaaaAGAGTGATGACAATGACATAATGATGAGCGCAGAGGATGCGATTGCAGCTCAGGAAGCCAAGGAGAAACAAGATGATGACCCCTTTGCTAACATGAGtaaaaaagagaagaagaaaaaaaagaaaataATGGAGTATGAGCGTCAGGTGGCGAGCGTTCGTGCTCAGAATGCTATAGAAGGAGATTTCTCTGTTTCTCAGGCTGAGCTGTCCTCTCGACAGGCCATGCTGGAGAATGCTTCAGACATCAAGTTGGAAAGATTCAGCATTTCTGCTCACGGTAAAGAGCTGTTTGTTAATGCAGACCTTCTGATTGTTGCTGGAAGACGATACGGTCTGGTTGGGCCAAATGGGAAAGGGAAAACCACTTTACTGAAGCACATTGCTAACAGAGCTCTTAGCATTCCTCCCAATATTGATGTCCTTCTTTGTGAGCAAGAGGTGGTGGCGGACGACACTCCTGCAGTTCAGGCAGTGCTGAAGGCCGACACGCGCAGACTGAAGCTCCTGGAGGAGGAACGGCAGCTCCAGAGCCGCTTGGAGAAAGGAGACGACAGCGTGTCGGAGAGACTTGACAAGGTATATGAGGAGTTGAGGGCGATTGGAGCCGCAGCAGCTGAGGCTAAAGCTCGTAGGATCTTGGCTGGTCTTTCTTTCACTCCAGAGATGCAGAACAGACCCACCAAGAAGTTCTCTGGTGGTTGGAGGATGAGAGTGTCACTGGCTAGAGCGCTGTTTATGGAGCCCACTCTGCTCATGCTGGACGAGCCCACTAACCACCTGGACCTGAACGCTGTCATCTGGCTTAACAACTATCTGCAAAGCTGGAAAAAAACACTCCTAATTGTGTCCCACGACCAGAGTTTCTTAGATGACGTCTGTACAGATATCATTCACTTGGACAATCAGAAACTCTACTACTACAGGGGCAATTACCTGACGTTTAAGAAGATGTACATCCAAAAACAGAAAGAACTCCAAAAGCAGTACGACAAACAAGAGAAAAAGCTGAAAGACCTGAAGGCTGGAGGAAAGTCCACCAAACAAGCTGAGAAACAGACGAAAGAGGCTCTGACAAGGAAACAGCAGAAGGGGAAGAAGAAAAGCCAGGAGGAGGAGAGTCATGAGGCCACGGAGTTGCTGAAGAGACCCAAAGAATATACTGTCAAATTTACCTTCCCCAATCCTCCGCCGCTCTCGCCGCCAATTCTTGGCCTGCACAGTGTTGACTTCGGTTATGAAGGCCAGAAGCCTCTCTTTAAAAATGTGGACTTTGGAATTGACATGGAGTCTAGAATTTGTATTGTTGGGCCCAATGGAGTCGGGAAGAGTACACTGCTTCTGCTTTTGACTGGGAAATTAAATCCTACAAAAGGAGAGATGAGGAAGAACCATCGATTGAAAGTAGGTTTCTTCAACCAACAGTATGCCGATCAGTTGAACATGGATGAGGCCGCCACAGAATACCTGCAGAGGAACTTCAACCTCCAGTACCAGGATTCCAGGAAGTGTCTGGGTCGCTTTGGGTTGGAGAGCCATGCACACACCATCCAGATTTCCAAACTGTCTGGTGGACAGAAAGCCAGAGTGGTATTTTCTGAACTCTCTTGTCGGCAGCCTGACGTCCTTATCTTGGATGAGCCCACAAATAACTTGGACATTGAGTCAATTGATGCGTTGTCAGAAGCCATCAATGAATATAAAGGAGCTGTGATAATTGTGAGCCATGATGCCAGGCTGATCACAGAGACCCAGTGCCAGCTGTGGGTGGTGGAGGACCAGTCAATCAACCAGATCGACGGAGACTTTGAAGACTACAAGAGAGAAGTGCTGGAGGCCCTTGGTGAGACCCTGGTCAACAAGCCTAAAGAGTGAAGCACGGCCGGTGTTTATTACAGGAGTGTCAAACTACATCACTGAAGGGCTTTTTGCTGCGTCTACATTGCTACTTCTCAATAGAACCAAAAAGTACCTGCATGCAAACATACAAACCCTACAGCTGCAGGACGAGTGAAAGCTGACGCCAGATCAGTATTTTCACATGCAGGGCTTGTTCTTTAGTCATGATGTCTGGCATTCTTGTGTTAATCTTACATTCAGGTCATGTAATCACCAGCTCTGTTCATCTTTCTGATGCAATGCTATTAAACCTGCTTTGTAACTGATCGCCACAGTGGGAATTTATCAAATGTGAACAGAGAGGACTAGAAGTGTGCCGTGTGATAACGGTGTCTGACTGCTAATGCTATTTACTATTAATGCCACTTCATAGTATTGGCTCTTGCGTTCACATCATTATATTATCATTGTGCTGACATACTGAACCAGCCTCAAACTGTTTCACCCTCACCTGTGTTCATACAGTGATGCATCTGTCTAGAATTATGAAATAAGCAGGGCTGTTGACTCATTGGGTTTGGATAGAAACCGAAATTTAAATGATTtgaaaaagcaaataaatgatTT
>TCONS_00029352
ttttttaaaaattattgcttttgttttatttcacattaaaaacataataataaaataaagttttaatttttatttaaaaaaacactacaaaaagtatGAAACGATAAATGGTATTGACAAAAGTAGTAATATCgttaaaaccttaacgatacccATCACTAGTCATTAATGTCCTATTAAAGATGAGGAATGAAGATAACTAAGTTGAGTGGTTTAACATGTTCTTCATATTTCTTCATGTTGATGTACAGGATGAGCCCACAAATAACTTGGACATTGAGTCAATTGATGCGTTGTCAGAAGCCATCAATGAATATAAAGGAGCTGTGATAATTGTGAGCCATGATGCCAGGCTGATCACAGAGACCCAGTGCCAGCTGTGGGTGGTGGAGGACCAGTCAATCAACCAGATCGACGGAGACTTTGAAGACTACAAGAGAGAAGTGCTGGAGGCCCTTGGTGAGACCCTGGTCAACAAGCCTAAAGAGTGAAGCACGGCCGGTGTTTATTACAGGAGTGTCAAACTACATCACTGAAGGGCTTTTTGCTGCGTCTACATTGCTACTTCTCAATAGAACCAAAAAGTACCTGCATGCAAACATACAAACCCTACAGCTGCAGGACGAGTGAAAGCTGACGCCAGATCAGTATTTTCACATGCAG
>TCONS_00029353
AAACGCCAGTGCAATACCTTTGGCGGCCTGCGAGAGGTTGTGGCGCTGTCACTAACCGAGCTCCCGGCGTTTGCCTGTCCGTGGCAGTAGAGCGCGGCGCGGACAGGCCGCATGTGCTGTGAACTGAGCTCCAGTGTGCTCGTGTTCATTGTCAGCTGTAAAACATCCCGCAGTCTCCTTTAACACATTGGCTTTTCATTCTTAGCAAAAGAAAAGGTTAAAAGAAAGATGCCTAAGAAGTCAAAAGAAAAGGCTGAGTGGGAGGGTGATGATGAACCACAAACAGtagaCAAACATGTCAAAAAAGGCAAGAAGGATAAGAAAGACAAGAAGAGTTTTTTTGAGGAGCTGGCATCAGAGAATAAACCAGAAAAAGAACAGCCACCAGTGAAAGAGGTGCAAGGAAAGCAGcctcagaagaagaagaaagacagGCGGAAAGGAAAACCAGGAgacgatgaagatgatgatgaagattcaGAGGTCATGCAGCGTCTCAAGAAACTGTCAGTCCAGGCTagtgatgaggaggaggaagaagaagTTGTTGTTCCAGCCAAAGGAGGAAAGAGAAACAAAGGTGGCAATATATTTGCTGCACTGAGCCAGGGGCAgagtgatgatgaagatgatgaagctggtggtgatgataatgatgatgatgatgacaaaccCAGAAGCAAGAAGAGCTCTAAGGAGGCCTCAGAGGACGAGCAAGATGAAGGTGCAGAGaaaaaagatgaaaatgaaaagaaaggaGGGAAAAAGGGCAAGAAAGCTGCTGCAGCTGCTAAACCATCTAAGGAGGAAGATGATATTGAAGAGAAAGAACAAGAGAAGTCCCAGAAAAAGGGCAAGAAGGAACCACCCAAGAAAGGGAAACCTGCTCGTCCTCCTCCgagtgatgatgatgaagaggaggaagaaaAGAGTGATGACAATGACATAATGATGAGCGCAGAGGATGCGATTGCAGCTCAGGAAGCCAAGGAGAAACAAGATGATGACCCCTTTGCTAACATGAGtaaaaaagagaagaagaaaaaaaagaaaataATGGAGTATGAGCGTCAGGTGGCGAGCGTTCGTGCTCAGAATGCTATAGAAGGAGATTTCTCTGTTTCTCAGGCTGAGCTGTCCTCTCGACAGGCCATGCTGGAGAATGCTTCAGACATCAAGTTGGAAAGATTCAGCATTTCTGCTCACGGTAAAGAGCTGTTTGTTAATGCAGACCTTCTGATTGTTGCTGGAAGACGATACGGTCTGGTTGGGCCAAATGGGAAAGGGAAAACCACTTTACTGAAGCACATTGCTAACAGAGCTCTTAGCATTCCTCCCAATATTGATGTCCTTCTTTGTGAGCAAGAGGTGGTGGCGGACGACACTCCTGCAGTTCAGGCAGTGCTGAAGGCCGACACGCGCAGACTGAAGCTCCTGGAGGAGGAACGGCAGCTCCAGAGCCGCTTGGAGAAAGGAGACGACAGCGTGTCGGAGAGACTTGACAAGGTATATGAGGAGTTGAGGGCGATTGGAGCCGCAGCAGCTGAGGCTAAAGCTCGTAGGATCTTGGCTGGTCTTTCTTTCACTCCAGAGATGCAGAACAGACCCACCAAGAAGTTCTCTGGTGGTTGGAGGATGAGAGTGTCACTGGCTAGAGCGCTGTTTATGGAGCCCACTCTGCTCATGCTGGACGAGCCCACTAACCACCTGGACCTGAACGCTGTCATCTGGCTTAACAACTATCTGCAAAGCTGGAAAAAAACACTCCTAATTGTGTCCCACGACCAGAGTTTCTTAGATGACGTCTGTACAGATATCATTCACTTGGACAATCAGAAACTCTACTACTACAGGGGCAATTACCTGACGTTTAAGAAGATGTACATCCAAAAACAGAAAGAACTCCAAAAGCAGTACGACAAACAAGAGAAAAAGCTGAAAGACCTGAAGGCTGGAGGAAAGTCCACCAAACAAGCTGAGAAACAGACGAAAGAGGCTCTGACAAGGAAACAGCAGAAGGGGAAGAAGAAAAGCCAGGAGGAGGAGAGTCATGAGGCCACGGAGTTGCTGAAGAGACCCAAAGAATATACTGTCAAATTTACCTTCCCCAATCCTCCGCCGCTCTCGCCGCCAATTCTTGGCCTGCACAGTGTTGACTTCGGTTATGAAGGCCAGAAGCCTCTCTTTAAAAATGTGGACTTTGGAATTGACATGGAGTCTAGAATTTGTATTGTTGGGCCCAATGGAGTCGGGAAGAGTACACTGCTTCTGCTTTTGACTGGGAAATTAAATCCTACAAAAGGAGAGATGAGGAAGAACCATCGATTGAAAGTAGGTTTCTTCAACCAACAGTATGCCGATCAGTTGAACATGGATGAGGCCGCCACAGAATACCTGCAGAGGAACTTCAACCTCCAGTACCAGGATTCCAGGAAGTGTCTGGGTCGCTTTGGGTTGGAGAGCCATGCACACACCATCCAGATTTCCAAACTGTCTGGTGGACAGAAAGCCAGAGTGGTATTTTCTGAACTCTCTTGTCGGCAGCCTGACGTCCTTATCTTGGATGAGCCCACAAATAACTTGGACATTGAGTCAATTGATGCGTTGTCAGAAGCCATCAATGAATATAAAGGAGCTGTGATAATTGTGAGCCATGATGCCAGGCTGATCACAGAGACCCAGTGCCAGCTGTGGGTGGTGGAGGACCAGTCAATCAACCAGATCGACGGAGACTTTGAAGACTACAAGAGAGAAGTGCTGGAGGCCCTTGGTGAGACCCTGGTCAACAAGCCTAAAGAGTGA
>TCONS_00029354
AGTGTGCTCGTGTTCATTGTCAGCTGTAAAACATCCCGCAGTCTCCTTTAACACATTGGCTTTTCATTCTTAGCAAAAGAAAAGGTTAAAAGAAAGATGCCTAAGAAGTCAAAAGAAAAGGCTGAGTGGGAGGGTGATGATGAACCACAAACAGtagaCAAACATGTCAAAAAAGGCAAGAAGGATAAGAAAGACAAGAAGAGTTTTTTTGAGGAGCTGGCATCAGAGAATAAACCAGAAAAAGAACAGCCACCAGTGAAAGAGGTGCAAGGAAAGCAGcctcagaagaagaagaaagacagGCGGAAAGGAAAACCAGGAgacgatgaagatgatgatgaagattcaGAGGTCATGCAGCGTCTCAAGAAACTGTCAGTCCAGGCTagtgatgaggaggaggaagaagaagTTGTTGTTCCAGCCAAAGGAGGAAAGAGAAACAAAGGTGGCAATATATTTGCTGCACTGAGCCAGGGGCAgagtgatgatgaagatgatgaagctggtggtgatgataatgatgatgatgatgacaaaccCAGAAGCAAGAAGAGCTCTAAGGAGGCCTCAGAGGACGAGCAAGATGAAGGTGCAGAGaaaaaagatgaaaatgaaaagaaaggaGGGAAAAAGGGCAAGAAAGCTGCTGCAGCTGCTAAACCATCTAAGGAGGAAGATGATATTGAAGAGAAAGAACAAGAGAAGTCCCAGAAAAAGGGCAAGAAGGAACCACCCAAGAAAGGGAAACCTGCTCGTCCTCCTCCgagtgatgatgatgaagaggaggaagaaaAGAGTGATGACAATGACATAATGAT

Function

symbol description
abcf1 Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050517-31 Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).

Ensembl:

ensembl_id ENSDARG00000031795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029351 False 3347 mRNA 0.46 27 30428913 30447637
TCONS_00029352 False 663 processed_transcript 0.38 2 30429332 30431750
TCONS_00029353 False 2802 mRNA 0.48 26 30429504 30447743
TCONS_00029354 True 821 mRNA 0.43 9 30442478 30447611

Neighbor

gene id symbol gene type direction distance location
XLOC_014874 ppp1r10 coding downstream 6674 30408317 ~ 30422239 (-)
XLOC_014873 agr2 coding downstream 24817 30400372 ~ 30404096 (-)
XLOC_014872 NA coding downstream 69854 30347509 ~ 30359059 (-)
XLOC_014871 NA coding downstream 112770 30312845 ~ 30316143 (-)
XLOC_014870 BX547939.1 coding downstream 128061 30147370 ~ 30300852 (-)
XLOC_014876 NA coding upstream 22227 30469970 ~ 30470501 (-)
XLOC_014877 bag6l coding upstream 27538 30475281 ~ 30510930 (-)
XLOC_014878 hpcal4 coding upstream 69568 30517311 ~ 30565122 (-)
XLOC_014879 NA coding upstream 144576 30592319 ~ 30623732 (-)
XLOC_014880 NA coding upstream 273269 30721012 ~ 30722504 (-)
XLOC_014711 CR382300.3 misc downstream 10700158 19728690 ~ 19728755 (-)
XLOC_014869 NA non-coding downstream 512946 29914349 ~ 29915967 (-)
XLOC_014865 CU861666.1 non-coding downstream 643701 29785095 ~ 29785212 (-)
XLOC_014883 NA non-coding upstream 383447 30831190 ~ 30835097 (-)
XLOC_014885 BX927219.1 non-coding upstream 514980 30962723 ~ 30965661 (-)

Expression


Co-expression Network