XLOC_014891 (tmem106bb)


Basic Information

Item Value
gene id XLOC_014891
gene name tmem106bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31392350 ~ 31402429 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029384
CAACTGCATGAACGCTCATCTAAACTATTAAATTCAGGTGTAAACAATGGGGAAGGCTCTTTCCCATGTGGCTAAGCATACCTGTCACGATGAGTGTCAGGACAGCCTGACCTCGTCCCCGGGTTACAGTGCCATGCAGACCGATGACAGCAAGAGTGGCGGAGACGTGTCTCAGTTCCCCTATGTGGAGTTCACTGGCCGGGACAGCGTAACTTGCCCCACATGCCAGGGCACTGGAAGGATCCCGCGAGGCCAAGAAAATCAGCTCGTGGCCCTGATCCCGTACAGTGACCAGAGGCTGAGACCAAGGAGAACCAAACTATATGTGATGGCTTCAGTCATATTGTGCCTGCTACTCTGCACTCTGGCTGTGTTCTTCCTTTTCCCTCGTTCCATTGATGTCAACTATGTGGGAGTGAAGTCTGTCTACGTGTCCTACGACCAGAGCAAACGCATCGTGTATCTCAATGTGACTaaCTCTCTGAATATTACTAACAATAACTACTATTCAGTGGATGTGGCCAACATCACAGCTCGGGTGCAGTTTTCCCAGACCGTGATTGGAAAAACCCGGATCAGCAATATTACTACTATTAGTCCCCTGGATATGAAGCAGATTGACTACATGGTGCCCACCACTATAGCAGATGAAATGAGCTATATGTATGACTACTGTACACTGCAGAGCATCAAGGTGCACAACATTGTGGTTATGATGCAGATTACCGTCACCACGGTGTATTTTGGGCATGCTGAGCAGGTGTCTCAGGAGATGTACCAGTAcgtggactgtggaggaaacactACAGCTCTGCATGAGTACAGTCTGAACACTCCACTAACAGGCTAAAGCTTACCCTAAAAGTGTAACACATCACCCTGTCCTACACCTCTCCACCCCACGACTCATAGAACTAGTCAAGGGTTTACTGCACGTCTGCTAGTTAACCACCAGATGTCAGGGTGATTGCAGTTCACAAAAATGATGCACTTTATTTACAGTGTTCTCCGAGCAATATAAACATTACAAGGGTGGAGTAGTTCTCATTCCAGTTCACGTTGCCAAACAGACCAAGCTAACAGAGTTCCCTTATTTTCAAACACTACCCATATAAAACccctttaaagggacagttccctaaaaaaattaacatttctcAAGTGGTCACAAACTTTTATAAAATCCata

Function

symbol description
tmem106bb Predicted to be involved in dendrite morphogenesis and lysosome localization. Predicted to be located in lysosomal membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human TMEM106B (transmembrane protein 106B).

GO:

id name namespace
GO:0048813 dendrite morphogenesis biological_process
GO:0032418 lysosome localization biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-37 Predicted to be involved in dendrite morphogenesis and lysosome localization. Predicted to be located in lysosomal membrane. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human TMEM106B (transmembrane protein 106B).

Ensembl:

ensembl_id ENSDARG00000035949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029384 True 1189 mRNA 0.46 8 31392350 31402429

Neighbor

gene id symbol gene type direction distance location
XLOC_014890 scin coding downstream 19454 31347675 ~ 31372896 (-)
XLOC_014889 arl4ab coding downstream 50500 31339305 ~ 31341850 (-)
XLOC_014888 BX465206.1 coding downstream 308377 31079326 ~ 31083973 (-)
XLOC_014887 bzw2 coding downstream 349641 31007901 ~ 31042709 (-)
XLOC_014886 rbbp4 coding downstream 384933 30999833 ~ 31007417 (-)
XLOC_014892 necab1 coding upstream 35260 31437689 ~ 31522677 (-)
XLOC_014893 tdp2b coding upstream 166563 31568992 ~ 31576321 (-)
XLOC_014894 C19H6orf62 coding upstream 176962 31579391 ~ 31584444 (-)
XLOC_014895 ripor2 coding upstream 191024 31593453 ~ 31707892 (-)
XLOC_014896 si:dkeyp-120h9.1 coding upstream 340675 31743104 ~ 31765615 (-)
XLOC_014711 CR382300.3 misc downstream 11663595 19728690 ~ 19728755 (-)
XLOC_014885 BX927219.1 non-coding downstream 426689 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 557253 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 669846 30721012 ~ 30722504 (-)
XLOC_014879 NA non-coding downstream 768618 30592319 ~ 30623732 (-)
XLOC_014901 CR382336.1 non-coding upstream 928084 32330513 ~ 32330630 (-)
XLOC_014908 CR318628.1 non-coding upstream 1247238 32649667 ~ 32649781 (-)
XLOC_014919 BX957357.1 non-coding upstream 1969935 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 2380354 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 2575449 33977878 ~ 33977994 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding CI01000054 null 7816225 ~ 7820975 (+)