XLOC_014903 (fuca1.2)


Basic Information

Item Value
gene id XLOC_014903
gene name fuca1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32488572 ~ 32493866 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029402
GGTCGCATGTGGGATGACATTTGATAAACCAGGAAATACAAACTGGCTGCTGGAGTCTGCATTACTTTGAACCATAAAGGTTTGTCAGGATAAAGTTCTCTTGGCATTCGTGCTCATGTTACACTTCAGTTTCACAGATTTACTGACCTCAGTGCATTTGAGCTGTGATCAAACATGCAAGTGACTCGGAGTCAGATGTCGCTGTTTCTTTGTCTGCTATCATGCGCGTCGGTTATCGGAGCTCGATATACTCCTGACTGGACAAGTCTGGACTCCAGACCTCTGCCTGGATGGTACGACGAGGTGAAGTTCGGCATCTTCGTTCACTGGGGGGTGTTTTCGGTGCCCGCTTTCGGCAGCGAGTGGTTCTGGTGGAACTGGAAGGGGGCACACGACTTTAAGTATATCCTGTACATGGTAAAGAACTACCCTCCAGGTTTCAGCTACGCGGATTTTGCGCCTGATTTCCACGCGCAGTTTTTTGACCCTGATGCTTGGGCTGAGATCTTCGAAGCTTCCGGAGCAAAATATGTGGTCCTTACATCGAAACATCACGAAGGGTTCACAAACTGGGAATCCCCGACTTCCTGGAACTGGAATTCTGTTGATAATGGACCTCACAGAGATCTGGTTGGAGATTTAGGCAATGCGGTAAGAAAAAGGTCTCTGCATTATGGACTCTATCACTCTCTGTACGAATGGTTCAATCCCCTCTACCTGAGTGACAAACAATCTGGTTTCAAGACCCAGGAGTATGTTGCAAGAAAAGCAATGCCTGAACTCTACGATCTGGTCAACAGGTACAAGCCAGACTTGATTTGGTCTGACGGCGACTGGGAAGCACCGGACACTTACTGGAACTCTACAGAATTCCTTGCCTGGCTCTACAACGACAGTCCAGTCAAAGACATAGTGGTGGTCAATGACAGATGGGGGAACGGATGTTACTGCAAACATGGAGGTTACTACAACTGCGCCGACAAATTCAGTCCTGGCGAGCTGCCCAAACACAAGTGGGAGAAATGCCAATCAGTGGACACTATATCATGGGGGTATCGCAGAAATATGAAGCTGAGTGAGCTGATGGATCTGCCAGCGCTTATAAAGGACCTGGTCTACACTGTGGCTTTAGGTGGGAATTACCTGTTGAATGTGGGGCCCACAGCAGATGGTGTGATCGCTCCTGTGTTTGAGGAACGTCTCAGAGGAATCGGAGCCTGGCTGCAGATCAACGGTGAAGCCATCTATGCAACGAGCTCTTGGAGAGTTCAAGCTGAGAATGCCACTGTTCCTGTCTGGTATACATCGAAAAACTCCACAGTGTATGCGATCTTTACCTCCAGTCCCAACCAGAACACCTTTGAACTTTCTGCACCCAAAACCTCGGACAACACAGTGGTGACTTTGTTGGGGAATCCTAAACCTTTGAAATGGGCTCCTCTGCATTCATCGGGACTGATTTTGTTGCTGCCTGATCTGCCTTTCTCACCCGCACAGGCCTGGACGCTCAAGCTGGAAGGGGTCGCCTGAAACCTTTAAGATCTTAATGAGGTTATcaggatttttttaatgtttatgtaGATTTCTGTATTTTTCTACTTGAAGTGTGACCTATGTGAATGGCCTTTATTACCAAAGCTGTGAAATGCTGCATTTTCAAATGGATTGTTTTGAATCGTGCGGTTGTGTTCAAAACACTATTTTTACAGGTCTGTCAGGGGCAtaaatttttgcataaataaattattcagaaaatgaaaaaaagaaagtaaaa

Function

symbol description
fuca1.2 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-78 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).

Ensembl:

ensembl_id ENSDARG00000035879

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029402 True 1774 mRNA 0.46 8 32488572 32493866

Neighbor

gene id symbol gene type direction distance location
XLOC_014902 gmpr coding downstream 1103 32472996 ~ 32487469 (-)
XLOC_014901 CR382336.1 coding downstream 157942 32330513 ~ 32330630 (-)
XLOC_014900 pag1 coding downstream 338358 32048379 ~ 32150214 (-)
XLOC_014899 znf704 coding downstream 446467 31956534 ~ 32042105 (-)
XLOC_014898 zbtb10 coding downstream 587679 31878454 ~ 31900893 (-)
XLOC_014904 fuca1.1 coding upstream 1553 32495419 ~ 32500373 (-)
XLOC_014905 zbtb8b coding upstream 11881 32505747 ~ 32518556 (-)
XLOC_014906 zgc:91944 coding upstream 77861 32571727 ~ 32600868 (-)
XLOC_014907 hpca coding upstream 128311 32622177 ~ 32710922 (-)
XLOC_014908 CR318628.1 coding upstream 155801 32649667 ~ 32649781 (-)
XLOC_014711 CR382300.3 misc downstream 12759817 19728690 ~ 19728755 (-)
XLOC_014888 BX465206.1 non-coding downstream 1404599 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 1522911 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 1653475 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 1766068 30721012 ~ 30722504 (-)
XLOC_014919 BX957357.1 non-coding upstream 878498 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 1288917 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 1484012 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 1694326 34188192 ~ 34230285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07193147_07196114 FUCA1.1, FUCA1.2 coding CI01000054 null 7193147 ~ 7196219 (+)