XLOC_014905 (zbtb8b)


Basic Information

Item Value
gene id XLOC_014905
gene name zbtb8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32505747 ~ 32518556 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029404
GCCCCGGAAGTACAACGTAGAAGGCAGGAAGCTGTCAATTgggtagacatttttaaaagctcaCCATGAACAACAACAACCTAGCCCAAAGCTGAATAGAAACGGATGGCTCTTCAACTGTGAACATGGATGTTCCTTCCTACCTGTCCAGGCTCTTGTCAGAGCTGAACGAACAGCGTAAGAGGAACTTCTTCTGTGACTGCAGCATCATAGTGGAGGGACGTGTGTTCAAAGCACATCGTAATATCCTCTTTGCCAGCAGTGGTTATTTTCGGGCTTTGCTGGTGCATTACCTGCAAGACAATGGCCAAAGACACAGCACGGCATCTCTGGACATCGTCACAGCTGAAGCGTTCTCCTTCATCCTTGATTTTCTGTATTCAGGACGCCTGGACCTTCGCAGTGACAATGTCATTGAAATAATGTCCGCTGCGAGTTACCTGCAGATGACCGATGTGGTGAACTTTTGCAAGGGCTACATCAAATCATCCCTGGAGATCTGTAACAGGGAAATCGAGAGACTCAGGGAAAGGGATGGGTTGGATAATAGTGCAACCCCAGTTTCGGTCACTTGCACCCCAGTGGCGTCCACTTCAGAAGCCGACCAAAGGACCTGTCAGGTCACAGAAGCCCTCAGTCCCGATGACGCCCCAACAGCTGCCGTTTGCACTCCAGCAAACACCAGCAGTAAAGACTCCGAAAGCGAAAACTCCCAAGGAGCATTTCCCAACCATACACCCATCAACGCTCCCCTCAAGGTCAGCCCAGGCCCAGATTTAGTCAACTCATCCACCCCAGGTCTACTTCTAGGGTTGGTGCATCCAAAAATTGAATACGACCCTGATGAGGAGGGTGAATCTTCAAGAGAATCCAAAGACGCGGCTCTTTATCAAGGCCCAAATCACGACGGAGAGAGGACTGTTAACACGAGCCCAGCTCCAAGCACTGAGCACTCATCTGTATCATTTGCTAACTGTCCGATGAAGCAGTTTCCAGATGTGTTGTACAGAGGGGGGATGAACCCTAACCGGGATGAACACTTTTCACAGAATTTGGGGTATGTGAGTGGATTCAGTCGGGGTGATGAGGTGCTTGGTCCGGCGGGTCCCTGTGGGATGGAGGTTCAGAACGATTGGTATGCAGATGATCCAGGGAGACTACACAAATGTCCATTCTGTCCCTATACGGCCAAACAAAAAGGCATCTTAAAGAGGCACATCCGCTGCCACACAGGAGAAAGGCCATATCCTTGTGAGGTCTGCGGCAAACGCTTCACGCGACAAGAACATCTACGAACTCATGCTATTTCTGTCCATCGCTCCACATGGCCCATTGTGTGCAAAGGCTGTCGGCAAGTGTTCTCAGGCATTGTGTCCCACGGAATGAAGCGATTTGGACTTTGTGACGGCTGCACGTTTGTTACTACAACTCACAATCACGATCCGTCCTCCATGAGCCTCAACATCCAGCCTGAAGCTGTGGAGAGAAGCGCTAGAGATTCTGATTGGCCCATGTTCATGGAGGAAGGAGATGAAGCGGAGGCGAGTGCTAGTAATGTTGAACAGGATGATAAACAGATTGTCGTAAAGCAGCTAGCAGACAATGGTACACTACTGTAG

Function

symbol description
zbtb8b Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB8B (zinc finger and BTB domain containing 8B).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-42 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB8B (zinc finger and BTB domain containing 8B).

Ensembl:

ensembl_id ENSDARG00000035889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029404 True 1619 mRNA 0.50 4 32505747 32518556

Neighbor

gene id symbol gene type direction distance location
XLOC_014904 fuca1.1 coding downstream 5374 32495419 ~ 32500373 (-)
XLOC_014903 fuca1.2 coding downstream 11881 32488572 ~ 32493866 (-)
XLOC_014902 gmpr coding downstream 18278 32472996 ~ 32487469 (-)
XLOC_014901 CR382336.1 coding downstream 175117 32330513 ~ 32330630 (-)
XLOC_014900 pag1 coding downstream 355533 32048379 ~ 32150214 (-)
XLOC_014906 zgc:91944 coding upstream 53171 32571727 ~ 32600868 (-)
XLOC_014907 hpca coding upstream 103621 32622177 ~ 32710922 (-)
XLOC_014908 CR318628.1 coding upstream 131111 32649667 ~ 32649781 (-)
XLOC_014909 nt5c1aa coding upstream 247867 32766423 ~ 32804535 (-)
XLOC_014910 si:dkey-284p5.3 coding upstream 321587 32840143 ~ 32849036 (-)
XLOC_014711 CR382300.3 misc downstream 12776992 19728690 ~ 19728755 (-)
XLOC_014888 BX465206.1 non-coding downstream 1421774 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 1540086 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 1670650 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 1783243 30721012 ~ 30722504 (-)
XLOC_014919 BX957357.1 non-coding upstream 853808 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 1264227 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 1459322 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 1669636 34188192 ~ 34230285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07189617_07192052 ZBTB8B coding CI01000054 null 7187977 ~ 7192069 (+)