XLOC_014907 (hpca)


Basic Information

Item Value
gene id XLOC_014907
gene name hpca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32622177 ~ 32710922 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029410
GTTTGACCAGGGGCCTTGGTGTTGTCACTGCGACCACAGAGACGTATCATCATGGGAAAACAGAACAGCAAACTCAGGCCTGAGATGCTACAGGACCTGAGGGAGAACACAGAGTTTACTGACCATGAGCTGCAGGAGTGGTACAAGGGGTTTCTGAAAGACTGTCCCAGTGGACACTTGAACGTCGAGGAGTTTAAGAAGATCTATGCCAACTTCTTCCCGTATGGTGACGCCTCGAAGTTCGCAGAGCATGTCTTCCGTACATTTGACACCAACAACGACGGCACCATCGATTTCCGGGAGTTCATCATTGCTCTGAGCGTGACGTCACGGGGAAAACTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTACGATCTGGATGGCAACGGTTACATCAGCCGCGAGGAAATGCTAGAGATCGTGCAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAATGCATGAAAGCTCTTATATCTCATTCTCCTTTGTGTTCCAGACGGAATAgtttcaagaaaaaaaagtgcAACGATTTTACTTTCAGTTTCTTTTTCCCAGAAAGGACATGCATACATCTGAATAACAAAGACAACACCTGCCAAGACAAGATCTTCTGTCTGCTGCGTGTCATCTGGCCTTGCCTCTGCAGAAGCTGGCGGAGTTTTcgactctaaaaaaaaaaagctgatcctGTTCCAGAGTCCAGATTATTTTGGAAAGGAATGTTCCTTTTTAGGAATCGTGCAGTGCATGCGCTCCCGAGCCTCTTGTGTTTCAAATCTGTGCTGTTTTGTTTCTCTTCTCCCTTTGTTTTGTGAGGGCACAGCTCCACTTTTTATATcgatatttatgtgtatatacagtataaatgcatATAGAACCATGTTAGGACTACGAAGGAAGGCAGTTATAGGCGTCTTTTTACTCGCGTGCATCTTACGGCAGTATTATGTAGCTTCAGACAGTATCCAAATCTTAGCCTCCTGCTGACCCGCGATGGACTGATGGACTGAATGTTGGGATTTTTCCGCTCTGGCGctcatgatctttattttttacaaagagAAGGCTGAGGACCCCATTCTTGAATTCTGTTCATTTGGTTTGCTGTAAATACATGGTTTGCTtccatatttctttatttattttgatttcttttttatgtttatggTGTGTATTTTCGTTATTGTTGAACCGAGATGTGAGATAAttcaaagcttttatttttatttttggcataCATTCCGCTGTGTTTTGAACGGAGGACACTGGTAGCACATATCATTTGAAGCGCTTCATCTGTGTGTCTGCGGTTATGCGCGTTTGTTTGTATACGCAAGAGTGAAGGTTTGCATGTTCTGGCgtatgtgtgcgtgtctgtgctACGTTTATAGTATCACTTTGTGTAGTTCTTTATGATATCTTTGTATGCAAGTACGTTTTTGAAACCCTCGATTTGAAGCAGCAAACTCGTGACTTTATCCTGCGGCAACTTTACCCTGCGTCTTATGGTACTCAAAATCATCACTGTTAGGTTTCCATTAAACAACATAGACAGGAATGTACAACACTATAATTTATGATCATGTTTCACCTTTAGATAAAGTCTATGAATACTGAAAGTGATCACTAAGGGCTTACTTCCACTATTGAATGAACAGGTGTAAAGAGAACGGCACTGCTTatgagttttctttttgttttatgcaACGACTGACATTCCATGACCTGAATTCTCCAGGTGCTCCTGCTTTATACAAACACATTAGCTCATGAACTCCATACATGCCCACACTCCCAGTACGCGTGTAGCTCTCACTTTTGCTGGCATCCGTGTTGCTTCCATATTTGTACCGAGACCATATTTGATGCTGCACCCTCTATGGCAACTTTTCCCTCTATTATGTTGCATGAAAACCTCATGCGAGGACATAATGATTGTCCCCTTTTACTGACGTTGATAAAATATACTTCTGTGTTTAGAATGTGTCTGAGAGTGATTCTTGCACAACGCTGATCTGTCTACTTATTGATCAACCTGGTCATGTGAGCACAAAGTGCAAATACTTATTTAGCAGGGTTGTGTGTCCTTCAAAGATGAACGGAGAATTCCTATAAAATTCTTTTAGATCTaatgtatggagccagatcagtctaaaaaattgtacatttaaaaaataatatgcatACATGCAGAGTAAAATTCACATTTACGAAATCCAATTCGTACATCTGtaaacaaacaatttatgaaTTCACAAgtgaaaatcataaatattttaaccaaattaattgtatttgtgaatagtgttttgaatttccgaattggatttgtatttttgaaacttttttgtttaaatttacgagttagatttgtgtgttttttaattgctatttttaattttatgaatcggatttgcatattaatgaattgtttacgaattggatttgcatatttttaaatcgttttttcaaatttacaaattggatttgcatatttataaattgtgttttgaatttacgaataggatttgcatatttttgaattgtgttttgaatttcaaattgaatgtgtattttttgaaatcatgttttgaattaacaaattggatttgcatattttcgAATAactttttgaatttacgaattggatttgcaaatttttttatataatttttgttatttagcaaattggatttgcgtattttttaaaaaaattattttgcaaattggatttgcatatttttgaataattttttgaaTTCACGTcttggatttgcatatttgttttatagttttttttttactttacggGTTGGATTTGcgtgttttaatcatttttgaattTAAGAGTTGAATTTGCGTCTTTTTTAAATTTtggattggatttgtgtatttttgaatcgttgTTTGAAAgttcaaattggatttgtgtatttttaaatttacgaactggatttgtgtgttttttagttgatttttaaatgtatgaattggatttgcatgtttttaataatttttttttgagtttactaatt
>TCONS_00029409
GTTTGACCAGGGGCCTTGGTGTTGTCACTGCGACCACAGAGACGTATCATCATGGGAAAACAGAACAGCAAACTCAGGCCTGAGATGCTACAGGACCTGAGGGAGAACACAGAGTTTACTGACCATGAGCTGCAGGAGTGGTACAAGGGGTTTCTGAAAGACTGTCCCAGTGGACACTTGAACGTCGAGGAGTTTAAGAAGATCTATGCCAACTTCTTCCCGTATGGTGACGCCTCGAAGTTCGCAGAGCATGTCTTCCGTACATTTGACACCAACAACGACGGCACCATCGATTTCCGGGAGTTCATCATTGCTCTGAGCGTGACGTCACGGGGAAAACTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTACGATCTGGATGGCAACGGTTACATCAGCCGCGAGGAAATGCTAGAGATCGTGCAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAATAAAGGACATGCATACATCTGAATAACAAAGACAACACCTGCCAAGACAAGATCTTCTGTCTGCTGCGTGTCATCTGGCCTTGCCTCTGCAGAAGCTGGCGGAGTTTTcgactctaaaaaaaaaaagctgatcctGTTCCAGAGTCCAGATTATTTTGGAAAGGAATGTTCCTTTTTAGGAATCGTGCAGTGCATGCGCTCCCGAGCCTCTTGTGTTTCAAATCTGTGCTGTTTTGTTTCTCTTCTCCCTTTGTTTTGTGAGGGCACAGCTCCACTTTTTATATcgatatttatgtgtatatacagtataaatgcatATAGAACCATGTTAGGACTACGAAGGAAGGCAGTTATAGGCGTCTTTTTACTCGCGTGCATCTTACGGCAGTATTATGTAGCTTCAGACAGTATCCAAATCTTAGCCTCCTGCTGACCCGCGATGGACTGATGGACTGAATGTTGGGATTTTTCCGCTCTGGCGctcatgatctttattttttacaaagagAAGGCTGAGGACCCCATTCTTGAATTCTGTTCATTTGGTTTGCTGTAAATACATGGTTTGCTtccatatttctttatttattttgatttcttttttatgtttatggTGTGTATTTTCGTTATTGTTGAACCGAGATGTGAGATAAttcaaagcttttatttttatttttggcataCATTCCGCTGTGTTTTGAACGGAGGACACTGGTAGCACATATCATTTGAAGCGCTTCATCTGTGTGTCTGCGGTTATGCGCGTTTGTTTGTATACGCAAGAGTGAAGGTTTGCATGTTCTGGCgtatgtgtgcgtgtctgtgctACGTTTATAGTATCACTTTGTGTAGTTCTTTATGATATCTTTGTATGCAAGTACGTTTTTGAAACCCTCGATTTGAAGCAGCAAACTCGTGACTTTATCCTGCGGCAACTTTACCCTGCGTCTTATGGTACTCAAAATCATCACTGTTAGGTTTCCATTAAACAACATAGACAGGAATGTACAACACTATAATTTATGATCATGTTTCACCTTTAGATAAAGTCTATGAATACTGAAAGTGATCACTAAGGGCTTACTTCCACTATTGAATGAACAGGTGTAAAGAGAACGGCACTGCTTatgagttttctttttgttttatgcaACGACTGACATTCCATGACCTGAATTCTCCAGGTGCTCCTGCTTTATACAAACACATTAGCTCATGAACTCCATACATGCCCACACTCCCAGTACGCGTGTAGCTCTCACTTTTGCTGGCATCCGTGTTGCTTCCATATTTGTACCGAGACCATATTTGATGCTGCACCCTCTATGGCAACTTTTCCCTCTATTATGTTGCATGAAAACCTCATGCGAGGACATAATGATTGTCCCCTTTTACTGACGTTGATAAAATATACTTCTGTGTTTAGAATGTGTCTGAGAGTGATTCTTGCACAACGCTGATCTGTCTACTTATTGATCAACCTGGTCATGTGAGCACAAAGTGCAAATACTTATTTAGCAGGGTTGTGTGTCCTTCAAAGATGAACGGAGAATTCCTATAAAATTCTTTTAGATCTaatgtatggagccagatcagtctaaaaaattgtacatttaaaaaataatatgcatACATGCAGAGTAAAATTCACATTTACGAAATCCAATTCGTACATCTGtaaacaaacaatttatgaaTTCACAAgtgaaaatcataaatattttaaccaaattaattgtatttgtgaatagtgttttgaatttccgaattggatttgtatttttgaaacttttttgtttaaatttacgagttagatttgtgtgttttttaattgctatttttaattttatgaatcggatttgcatattaatgaattgtttacgaattggatttgcatatttttaaatcgttttttcaaatttacaaattggatttgcatatttataaattgtgttttgaatttacgaataggatttgcatatttttgaattgtgttttgaatttcaaattgaatgtgtattttttgaaatcatgttttgaattaacaaattggatttgcatattttcgAATAactttttgaatttacgaattggatttgcaaatttttttatataatttttgttatttagcaaattggatttgcgtattttttaaaaaaattattttgcaaattggatttgcatatttttgaataattttttgaaTTCACGTcttggatttgcatatttgttttatagttttttttttactttacggGTTGGATTTGcgtgttttaatcatttttgaattTAAGAGTTGAATTTGCGTCTTTTTTAAATTTtggattggatttgtgtatttttgaatcgttgTTTGAAAgttcaaattggatttgtgtatttttaaatttacgaactggatttgtgtgttttttagttgatttttaaatgtatgaattggatttgcatgtttttaataatttttttttgagtttactaatt
>TCONS_00029411
CTCCTCCGGCAGAGCAGCGCCGCGGCTCGTGTTCCTCCGGTAAGATGGTGAGCAGCGCGCGGCAGCAGTAGAGCAGTGTCGCTGGACCGTAAGAGAAGGCGCTCTCGGTGCTTATCCCGCTCTCCTTCCACAACATATCCATACACCGAGGGAAACTTCGCGTATTTTTGGACACGGTTTGACCAGGGGCCTTGGTGTTGTCACTGCGACCACAGAGACGTATCATCATGGGAAAACAGAACAGCAAACTCAGGCCTGAGATGCTACAGGACCTGAGGGAGAACACAGAGTTTACTGACCATGAGCTGCAGGAGTGGTACAAGGGGTTTCTGAAAGACTGTCCCAGTGGACACTTGAACGTCGAGGAGTTTAAGAAGATCTATGCCAACTTCTTCCCGTATGGTGACGCCTCGAAGTTCGCAGAGCATGTCTTCCGTACATTTGACACCAACAACGACGGCACCATCGATTTCCGGGAGTTCATCATTGCTCTGAGCGTGACGTCACGGGGAAAACTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTACGATCTGGATGGCAACGGTTACATCAGCCGCGAGGAAATGCTAGAGATCGTGCAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAATGCATGAAAGCTCTTATATCTCATTCTCCTTTGTGTTCCAGACGGAATAgtttcaagaaaaaaaagtgcAACGATTTTACTTTCAGTTTCTTTTTCCCAGAAAGGACATGCATACATCTGAATAACAAAGACAACACCTGCCAAGACAAGATCTTCTGTCTGCTGCGTGTCATCTGGCCTTGCCTCTGCAGAAGCTGGCGGAGTTTTcgactctaaaaaaaaaaagctgatcctGTTCCAGAGTCCAGATTATTTTGGAAAGGAATGTTCCTTTTTAGGAATCGTGCAGTGCATGCGCTCCCGAGCCTCTTGTGTTTCAAATCTGTGCTGTTTTGTTTCTCTTCTCCCTTTGTTTTGTGAGGGCACAGCTCCACTTTTTATATcgatatttatgtgtatatacagtataaatgcatATAGAACCATGTTAGGACTACGAAGGAAGGCAGTTATAGGCGTCTTTTTACTCGCGTGCATCTTACGGCAGTATTATGTAGCTTCAGACAGTATCCAAATCTTAGCCTCCTGCTGACCCGCGATGGACTGATGGACTGAATGTTGGGATTTTTCCGCTCTGGCGctcatgatctttattttttacaaagagAAGGCTGAGGACCCCATTCTTGAATTCTGTTCATTTGGTTTGCTGTAAATACATGGTTTGCTtccatatttctttatttattttgatttcttttttatgtttatggTGTGTATTTTCGTTATTGTTGAACCGAGATGTGAGATAAttcaaagcttttatttttatttttggcataCATTCCGCTGTGTTTTGAACGGAGGACACTGGTAGCACATATCATTTGAAGCGCTTCATCTGTGTGTCTGCGGTTATGCGCGTTTGTTTGTATACGCAAGAGTGAAGGTTTGCATGTTCTGGCgtatgtgtgcgtgtctgtgctACGTTTATAGTATCACTTTGTGTAGTTCTTTATGATATCTTTGTATGCAAGTACGTTTTTGAAACCCTCGATTTGAAGCAGCAAACTCGTGACTTTATCCTGCGGCAACTTTACCCTGCGTCTTATGGTACTCAAAATCATCACTGTTAGGTTTCCATTAAACAACATAGACAGGAATGTACAACACTATAATTTATGATCATGTTTCACCTTTAGATAAAGTCTATGAATACTGAAAGTGATCACTAAGGGCTTACTTCCACTATTGAATGAACAGGTGTAAAGAGAACGGCACTGCTTatgagttttctttttgttttatgcaACGACTGACATTCCATGACCTGAATTCTCCAGGTGCTCCTGCTTTATACAAACACATTAGCTCATGAACTCCATACATGCCCACACTCCCAGTACGCGTGTAGCTCTCACTTTTGCTGGCATCCGTGTTGCTTCCATATTTGTACCGAGACCATATTTGATGCTGCACCCTCTATGGCAACTTTTCCCTCTATTATGTTGCATGAAAACCTCATGCGAGGACATAATGATTGTCCCCTTTTACTGACGTTGATAAAATATACTTCTGTGTTTAGAA
>TCONS_00029412
tgttacattgttgctctttgctcttggagcggttcgctttcacactgcaaagtttctaaacggaccaaaagagctaaaacaagtcacgtGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAAT
>TCONS_00029413
AGAAGCCATTAGCATGTGCTTAGCGTGCTCGGTCGGTACCTTAGGCAGGTTTGGCAGATCTTCATTCTGCACGATAGTCTTGGACTAGCAGAAACGAGGGAGACTCTCTTCTCTGCGGGATTAACGAGTTAAATTTAACCGGGGTTTATCCCTGTGTGTGCAGAACGGCGGGATTATCCGCAAGCTCATGGAGGTTACAGTTGGCTGGCACTCAGAGATTGCAGCGTGTTGCATATTTTATCACAGCGGCTGCTTTTAAAAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAAT

Function

symbol description
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-1683 Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

Ensembl:

ensembl_id ENSDARG00000018397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029410 False 3238 mRNA 0.37 4 32622177 32641725
TCONS_00029409 False 3139 mRNA 0.37 5 32622177 32641725
TCONS_00029411 False 2361 mRNA 0.44 5 32623230 32710922
TCONS_00029412 False 213 processed_transcript 0.48 2 32624756 32625879
TCONS_00029413 True 492 lncRNA 0.48 3 32624756 32632138

Neighbor

gene id symbol gene type direction distance location
XLOC_014906 zgc:91944 coding downstream 21309 32571727 ~ 32600868 (-)
XLOC_014905 zbtb8b coding downstream 103621 32505747 ~ 32518556 (-)
XLOC_014904 fuca1.1 coding downstream 121804 32495419 ~ 32500373 (-)
XLOC_014903 fuca1.2 coding downstream 128311 32488572 ~ 32493866 (-)
XLOC_014902 gmpr coding downstream 134708 32472996 ~ 32487469 (-)
XLOC_014909 nt5c1aa coding upstream 55501 32766423 ~ 32804535 (-)
XLOC_014910 si:dkey-284p5.3 coding upstream 129221 32840143 ~ 32849036 (-)
XLOC_014911 laptm4b coding upstream 153655 32864577 ~ 32888758 (-)
XLOC_014912 mtdha coding upstream 184457 32895379 ~ 32914305 (-)
XLOC_014913 rrm2b coding upstream 205450 32916372 ~ 32928486 (-)
XLOC_014711 CR382300.3 misc downstream 12893422 19728690 ~ 19728755 (-)
XLOC_014901 CR382336.1 non-coding downstream 291547 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 1538204 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 1656516 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 1787080 30831190 ~ 30835097 (-)
XLOC_014880 NA non-coding downstream 1899673 30721012 ~ 30722504 (-)
XLOC_014919 BX957357.1 non-coding upstream 661442 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 1071861 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 1266956 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 1477270 34188192 ~ 34230285 (-)
XLOC_014928 NA non-coding upstream 1570964 34281886 ~ 34283008 (-)

Expression


Co-expression Network