XLOC_014916 (trib1)


Basic Information

Item Value
gene id XLOC_014916
gene name trib1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33200266 ~ 33212023 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029428
AAAGAACCGACTCGCTCGAATCGGACATCAGCTGAAAGTAGAGCTCAGAAAGCAGCATCAGTAGTTTAGTCAGTGAGTCAGACAGCCCTTCTTTCGGGCTCAGATCCACACCGGGAATATTTCACACCGCACAGCTGCTTCATACTGTATCTCCCTCTTGGGCTTCAGTACAGAAAGATTCCTCGGACTAATGCAATTACTGAAAAACAATGGATAAGCGAAACTGCAAAACTGCGATACAGACACTTTTTTTGCATTTCACATTCATTGACGAGTGAGTAGaatctttttattttcattttgcacAGAAACCTTTTGCTGGATTATGTTTGCGTGAAATCAGACGGTACGGGCATTTCACTTTCGGCTACTGTAGTTTGTAAGAATGAGCGTGCAGTGGATTCATAACCCGGTAACGTTACCGGGAAGACACGGACACAAGCGCTTTGACACAGACGAGCCCGTGAGCAGATGTCCGCGGCTCAGCGAGTCCTCGGCAGATGCGGGTCTCCTGGGATCCTCACCGGGATCTCCGGTAAGCGGAGCGCCTCTGAGCGTCACCTCAGCTCACCAGGGTCCCGCTCGCATCGGCCAGTTCCTGTTGGTGCCCCTGACCGACCGACCGGGGGTGCAGAGCGCTTTAGATATGGACACAGGAGAGGAACTGCTCTGCAAGGTGTTTGATATGGGCCAATACCAGGAGAAAATAAGAGCCTACAGCATGCTGTCAAATCATAAAAACATTGCACAGATCAAAGACATAGTTCTTGGGGAGAGCAAAGCCTATGTGTTTCAGGAGAAGGATTTTGGCGACATGCACACATTTGTAAAGAGCAGCAAGAGGCTTTCTGAAGACTTGGCATCCAAGCTTTTCTACCAGGTTGTATCTGCAGTGAATCATTGCCACCAGGTCGGCATTGTTCTGGGAGACCTCAAGCTCCGCAAGTTTGTGTTCACAGATGAGAAAAGGACTCATTTGAAATTGGAGGGTCTGGAGTACTGCCATGTTCTGTGTGGAGAGGACGACTCAATGTTCGACACGCACGGCTGCCCTGCGTACGTGAGTCCTGAGATACTGAACGGTGGAGGCTGCTACTCGGGCAAGCAAGCAGACGTGTGGAGCCTTGGTGTAATGCTGTACACAATGCTGGTGGGCCGCTATCCTTTCCATGACGCAGACCCTGCAACCCTATTCTCTAAGATTCGACGAGGCACATACTGCCTCCCGGATGGACTGTCTTTAACGGCGCGCTGCTTGCTTCGCAGTCTCCTCAGAAAAGACCCCGGTGAAAGACTGACCGCCGCCGAGGTGCTTATTCACCCGTGGTTCAACAGCAACATTCAGGACAGCCGAAATCCAGAACAGGAGGTGAACCTCAGAGAACAGACAGTGCCCCAGATAGAAATGGAGCAGGACGAGGATCTGTTCTCCTGAGGAAAGCAATACACAGTAGCTTGAATGTGGACCAAATatggtgttttgttttcttatacAGATTTTGTAATAGATTCAGAAGTATACACTCACTCGAAGTACTGTATCATCCGTGTCGGGTTTAAGGACTGTGTGTTATGAAGTCTTTTGGTGCTAGTGAACCGTTCTCGTGCTGTGTGAAGTGTATGAGACTGGGCATTATGGGTcaggtgataataataataatgagtagGTAATGGTGACTAACCTCAGCCTATGGGccagatctgttccaactcttaCTGTCTAAACTAGTCGACTCATCACTGAATTATGCAGTACAAAAGATATAGGTCTCTTGACCTATAACAGATGTTTTCAACTAAAAACCAAAAACACTGTTTGCGTTTTGGCAGTTCATTTACAGAATAACAGCATTTTAAGGACCTGAATTCAATGGGTTtcaaagtgtaattttttttgtcatgcGCATTATTTATTCAGTCTGCAGGCATGTGTGagtacttgacaaccaaaacaacaatggtGGATTACATGGGTtcgttcttcatacctcgcttaaatgattgacaaatcctggatcttttaatcttgataactgatttctGGAGATTAGAATGTCTAGATGAACGGaactgagatcgctgcgtgtgttgtgaaggacagatctatcgatcctcaaaatcagGATCAtaaatgacatcatctgattaatattcaattatgacTGCCCCATGGCAGTCTTTGTCtttttatttcggagtgcagattgttttatttatatattttttaaacttacaTTGCTATATATACACTTGCTATATACAAGTGCTACATACactatatacactatatacaaGTGCTACATTgctatatacactatatatatatatatatatatatattttttttttttttaaacgatttattattttctcctaagtgtatataactactactgtaagacaatatcagcattcggtacatactttcagaattacctttgcttgaaatgacccgatctaatcctgtttatatgatataagcctgctcccgagcaggtttgagctacatgacctgttgctatgacaacaactctcaaaTGAGTTTTGAAggacgaaatgatcctggatcatgtctaATCATCAATAATAACCAAATcaagctaattgagtaatccacatatGAAGAACGGGCCCAAGGACTGTATGTGCACATGTGCGTAGTGTTTCCTTACAAAGTCACCTCCACCCACTGACCATTTTTAGTTATTGTCATGAACATTTGTATCCGAAGCTTTGAAAAATTGCAAAGAAACTTACATCTTTGCTGTGTTAGTACATCTTTGCTGTGTTAATGTACCCCCAGACGCCCTTATGGAGGACTAGAAGTGCCACTTAAATCATATAATGAAGAAGCAATTATCAAACAGATAtgtttgaacattttaatatatatttttactttggaatatagttatataaaaataaatgttttaaaacacagATGGTTATAAATAACATCACATTGTTGCTGCATTTTAAGTCCATGAAGACAGTTTTATACAGTGATATTAAACTGATATTAAACTGtccgaaaacaaacaaaaaacatctaaatatgctcaatatgtctttttatttacatataaaatcaATTCTTAATAGGACATGTGAAAATTGGACGGATGTGTATCACTAattgaaataaacattaaaatttatGTATATAATTGTCCATTTTAAAAGCGTATTCATGTATATAGCTAGCTGAATTCATGAATCATTTGGTGGCACTTCCTCCTACAcactataagctgttttaaatcAATGATACTGTTTGCTATCCTGACTCGCACCTCTCAGAATTGCCAAATTGTACAGAAGAGCTGGTCAAAGGTTAAATGTTAGTTATTGACCTTTAAGACTCATCCACAATGAAGAGGTTACCATTACAAACATATTCTTAAATAAAGCAGATTTACAGTAAATGTTCAGGACAACCCTCAGGAAAGTCACAGACAGATACAAAGTATCTGTCTTCTAGTCACAGTTTCCTTACTTGAATCCAAAGGATCCTCATAAAAGCACGAGGTTTCAGTATGGTTGGTTCTGTGGGTAAGATAAAAGATGACTCAAGAGCTGGGCATTGGTGTAATGAAGAGGAAAGGGCTATGAACCCAGATGAATGTGCTCAGTATATGTATCTTTAAAGAAGAGAACTATATGACAATAGCACTACTGTATGGGTAGAGTGTCCTATAAAGGTCTCCTCGTTTTGGGGGTGGACGTTACCTCTGAATTGCAGGCATAATGGCGATACGCTTTCTGAAAGGCTCTTTATAAACAAAGGCTAGAGGGTATGCAAAATGTCTGTCTCATGCATGCAGCACATGGGGGAAAGCTGACACGAGTGCACAGAGTTCATATTGCACTGTGAATTATGTATTTGTGACACAAACCTCAAGGCACGACCGTGAGGGTTTAGTGGTTAAAATTCGTTGTACAAATGAGCATgtgtaaatatgtacattttaagtGTGTGAACAGAAGTGAATAAAGATTACTCTTTCTTATTTACATAAGTGGTGGATTTTCTTATGTGAAAACTTCTTTCTAAAAGTAGattgcatatttttaattgttaaatccAAATTATGCAATATAAAtatccctaacctgcctagttaacctaattaatctagataagtctttaaatttccctttaagctgtatataggtgtcttgaaaaatatctattaaaatattatgtactgtcattatggcaaagataaaataaatccgttatttgaaatgagttattaaaactattatgtttataaatgtgttgaaaaaaaaatattttcatcaaacagaaaaaaataaacagggatgctaataattctgacttcaaatatataaCTACAAAACTCCAAAAAAGTTCCATGCGCTAAATTTATGTtaagataacataaataaattaatttaacttatcaatttttacaaatttcagtggattgaacataaatagTTAAGTAGTCCCCAAATAACCTCatgagttgtgttgtttcagctcattttaaataggtagtttgaacaaacagcaaatgtcattatttaaatgtacttataatattaattaaataaatcccagcaaacacaatgtcataagacattaataataggttagatttaggtcgccagcatctaaggactatgttattttgacgtccaataatgatgtgaaatgagttgatattttgttgattataGGTTGTGTTGAAATGTGACCAAATCCAATGGTGAGCCAACATAAAcctaaaccaatgtcatattgatgtcaaatactgacatttattcataagGTATGGCAATCataatccaacgtctgatagacgtcatattggtaacttCCACCcagcatcaagctgtaacattagacattgatatttcaTTGCTAAaagtttttaggttgtgttggaaagtaaccaaaatgcaatgtctatccgatgttggacattgatgtcagcctgatgttgggttctgactacaacctgattttcatttccaaacaaaatgcaacaaccCACGACGCTGGGGTACACTGTAATAAAattcagggttccacacaattcatttattttgtcccaacacaaatcaactaagttaacataacaaatttttgtgaattgaacataaaaatcaGATTCCAAAATAAAAACATCCAGAACTGGATATTGCTTTAAGCTTATactaaataagcagtttgaacaagcagcaaaaatgttttttgagtgtacaacatcaatctgatgtcatgttgaagTCCTGTACCTGCTGGGATCACCTAAATATACTTAAGGGAAATTCACTTGTTTGTCACAGTTAGATACACTTTTATTATTGTAGACTGTAAataatctgtaaattaacagtttgatgtatttagtgattttttttctcattagttTATACTTTGAATTGCTTTACGGAATCCTGAGGTTTCCttcaacaacttttgatgtttaaagtttaaaaatgttacctttattaactttttaatagttttaggtGATATAGTATATGGGTTGGTGTTGTGAATTATTGtagaaaaaatgttaataaactgCAAGCACTTTTCtgatattttacataatttttaattCTCTATTCAATATATTACTGTTTTACAATatgttgtttcaaactactataatgtcaataaaagtcactctgTTCAACTACAAACTTGAATTTTCAACATATGTAGACAGAGCAAAAACCaaggtcatttattcattcattttcttttcggcttagtccctttattaatcagaggtcgccacagcggaatgaaccgccaatttacgcagatgatgcccttccagctgcaacccatcactggtaaacatccatatacactcatttacacacattaactacggctaatttagtttattcaatttacctatagtgaatgtctttggactgtgggggaaaccggagcaccaggaggaaacccatatgAAGACGGGGAAAACATGACAACTGTTAATTAACACACATTATTTAGTGTATGTTtgcataaatgtaatttataatcataataattctttattttaaccataatatgttatatttaaaGCTTGTATATTTTACATGCATTAAATTGTATAAGTAATACAAATCAATGGTGTTTTTGCTATCAGTAAGTTAATGttatcattttt

Function

symbol description
trib1 Predicted to enable mitogen-activated protein kinase kinase binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Orthologous to human TRIB1 (tribbles pseudokinase 1).

GO:

id name namespace
GO:0043405 regulation of MAP kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0001889 liver development biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0031434 mitogen-activated protein kinase kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091207-4 Predicted to enable mitogen-activated protein kinase kinase binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Orthologous to human TRIB1 (tribbles pseudokinase 1).

Ensembl:

ensembl_id ENSDARG00000110963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029428 True 6164 mRNA 0.37 3 33200266 33212023

Neighbor

gene id symbol gene type direction distance location
XLOC_014915 klhl38a coding downstream 113020 33084066 ~ 33087246 (-)
XLOC_014914 azin1b coding downstream 256216 32930476 ~ 32944050 (-)
XLOC_014913 rrm2b coding downstream 271780 32916372 ~ 32928486 (-)
XLOC_014912 mtdha coding downstream 285961 32895379 ~ 32914305 (-)
XLOC_014911 laptm4b coding downstream 311508 32864577 ~ 32888758 (-)
XLOC_014917 fam92a1 coding upstream 46549 33258572 ~ 33275035 (-)
XLOC_014918 nkd3l coding upstream 156129 33368152 ~ 33370271 (-)
XLOC_014919 BX957357.1 coding upstream 160341 33372364 ~ 33372694 (-)
XLOC_014920 NA coding upstream 570760 33782783 ~ 33786703 (-)
XLOC_014921 si:ch73-302o18.2 coding upstream 616953 33828976 ~ 33835396 (-)
XLOC_014711 CR382300.3 misc downstream 13471511 19728690 ~ 19728755 (-)
XLOC_014908 CR318628.1 non-coding downstream 550485 32649667 ~ 32649781 (-)
XLOC_014901 CR382336.1 non-coding downstream 869636 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 2116293 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 2234605 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 2365169 30831190 ~ 30835097 (-)
XLOC_014924 CU928445.1 non-coding upstream 765855 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 976169 34188192 ~ 34230285 (-)
XLOC_014928 NA non-coding upstream 1069863 34281886 ~ 34283008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_06789505_06789810 NA coding CI01000054 null 6788362 ~ 6789946 (+)