XLOC_014917 (fam92a1)


Basic Information

Item Value
gene id XLOC_014917
gene name fam92a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33258572 ~ 33275035 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029429
TGCAACAAACGGTATTGTATTGTCTTAAAACTAATTTATGACCAAGTAGTTTTAAATCAGTTTGGTACTAAATGTCAGTTGTACCCGAGCTGATGTGGGAACTCTCAGTGCAAAAGTAAAAGCTCTCAGCGAGTGATATACTTGCATCATGTATGTCTGCGGCTCAGAACACTTTGTGCTTTGCTTTTCATTGTGTGTTGTGTCACGAAAGGCTGAGAGTGAACTCCAGAGAGCCACAATGGACGCCACACGCACGACTCGCCAGCTTGAGGAGACAATAGATGACTTTGAAAAGCAGAAGATTCGTGATATTAAGAAAGTTTTGGGTGAATTCGTGACGGTGGAGATGGCGTTCCATGCCAAGGCTTTGGAAATTTACACCACAGCTTACCAGCACATTCAGAATGTAGATGAGGAAGGAGACCTTGAGGTATTCAGGAATTCACTGCATCCTCCTGATTACCAGTCACGTTTAGAAATCGTTCGTGCAAATTCTAAACTGTCCCTGAATCGAACTGGTACATCAATGAGTAAATCAGGAACAATGCAGTCAAGAACATCAAGCAGACAGAGGAAAAGGGATGACGAAGAAGATGAGgaggaagatgatgaagatgaggacGATTTGGAGGAAGTGACTGATGATGAGCATTGAAGTCGAATATCCTCAACATTTTCACACAGCGACATTCCTGGACTGCACAGTGTTTTTAATAGAGATGAATGATATCAAATTAATTTGCATCACAGGTAATAAATGTAATGGTAGCTGAGCAATGTTAGCTTAAGATAAGTGCGTTGTATATGTGTTTGCTCACTTCTAAATCATATACCATGAAATTATACAGATTTACATCTTCAAACAGAGTTTTCTATTCAATTTTATTAACAAAGTTTGTGTACGAAGTGCCAAGCAGTTTCCTTGTTTAGTATGACGTTTATTTAGAAGGTGCCTTAGAGAGTGTTGGTGTACCAAATAAAACTGGCGCTTGCTTTTGCATAACAGGCAGTTTTTTCATG
>TCONS_00029430
GCTGCAGAATAGCATTAGCACATAACAGTCTTTCTGCTTTATTAAAGcttgaatttatatattttataagtagCTATCGGTTGCGAGTAATGATGAGCCGCACTCCCGATGCAAGAGCGAGAGATACCCAGACCAAGCAGATCCAGGAGAATATCACCAGTGTGGAAAAACACTTCGGAGATCTTTGCCAACTGTTTGCTGCCTATGTCCGTAAAACTGCACGGCTACGAGATAAAGCAGATCTCCTGGTCAAGGAAATCAACGTTTATGCTGACACCGAGACACCAAACTTAAAATGTGGACTCAAGAATTTTGCAGATCAACTAGCCAAAGTTCAAGACTACCGGCAAGCAGAGGTGGAGAGGCTGGAAGTGAAAGTTATAGAGCCTTTGAAAGCATATGGGAATATTGTCAAAACAAAAAGGGAGGACCTGAAGCAGACCCAGAGTGCAAGGAACAGAGAGGCCAAGCAGATGCAGCAGCTGGAAAGAATGAGGCAGAGAAACCCCTCTGACAGACAGATCATTTCACGAAAGGCTGAGAGTGAACTCCAGAGAGCCACAATGGACGCCACACGCACGACTCGCCAGCTTGAGGAGACAATAGATGACTTTGAAAAGCAGAAGATTCGTGATATTAAGAAAGTTTTGGGTGAATTCGTGACGGTGGAGATGGCGTTCCATGCCAAGGCTTTGGAAATTTACACCACAGCTTACCAGCACATTCAGAATGTAGATGAGGAAGGAGACCTTGAGGTATTCAGGAATTCACTGCATCCTCCTGATTACCAGTCACGTTTAGAAATCGTTCGTGCAAATTCTAAACTGTCCCTGAATCGAACTGGTACATCAATGAGTAAATCAGGAACAATGCAGTCAAGAACATCAAGCAGACAGAGGAAAAGGGATGACGAAGAAGATGAGgaggaagatgatgaagatgaggacGATTTGGAGGAAGTGACTGATGATGAGCATTGAAGTCGAATATCCTCAACATTTTCACACAGCGACATTCCTGGACTGCACAGTGTTTTTAATAGAGATGAATGATATCAAATTAATTTGCATCACAGGTAATAAATGTAATGGTAGCTGAGCAATGTTAGCTTAAGATAAGTGCGTTGTATATGTGTTTGCTCACTTCTAAATCATATACCATGAAATTATACAGATTTACATCTTCAAACAGAGTTTTCTATTCAATTTTATTAACAAAGTTTGTGTACGAAGTGCCAAGCAGTTTCCTTGTTTAGTATGACGTTTATTTAGAAGGTGCCTTAGAGAGTGTTGGTGTACCAAATAAAACTGGCGCTTGCTTTTGCATAACAGGCAGTTTTTTCATG
>TCONS_00029431
CTCTAGAGGGCGCTTTGTAGCTCCATGGAAACGACACGGCGTTCTTCCGGATTTCCTGCTGCAGAATAGCATTAGCACATAACAGTCTTTCTGCTTTATTAAAGcttgaatttatatattttataagtagCTATCGGTTGCGAGTAATGATGAGCCGCACTCCCGATGCAAGAGCGAGAGATACCCAGACCAAGCAGATCCAGGAGAATATCACCAGTGTGGAAAAACACTTCGGAGATCTTTGCCAACTGTTTGCTGCCTATGTCCGTAAAACTGCACGGCTACGAGATAAAGCAGATCTCCTGGTCAAGGAAATCAACGTTTATGCTGACACCGAGACACCAAACTTAAAATGTGGACTCAAGAATTTTGCAGATCAACTAGCCAAAGTTCAAGACTACCGGCAAGCAGAGGTGGAGAGGCTGGAAGTGAAAGTTATAGAGCCTTTGAAAGCATATGGGAATATTGTCAAAACAAAAAGGGAGGACCTGAAGCAGACCCAGAGTGCAAGGAACAGAGAGGCCAAGCAGATGCAGCAGCTGGAAAGAATGAGGCAGAGAAACCCCTCTGACAGACAGATCATTTCACAGGCTGAGAGTGAACTCCAGAGAGCCACAATGGACGCCACACGCACGACTCGCCAGCTTGAGGAGACAATAGATGACTTTGAAAAGCAGAAGATTCGTGATATTAAGAAAGTTTTGGGTGAATTCGTGACGGTGGAGATGGCGTTCCATGCCAAGGCTTTGGAAATTTACACCACAGCTTACCAGCACATTCAGAATGTAGATGAGGAAGGAGACCTTGAGGTATTCAGGAATTCACTGCATCCTCCTGATTACCAGTCACGTTTAGAAATCGTTCGTGCAAATTCTAAACTGTCCCTGAATCGAACTGGTACATCAATGAGTAAATCAGGAACAATGCAGTCAAGAACATCAAGCAGACAGAGGAAAAGGGATGACGAAGAAGATGAGgaggaagatgatgaagatgaggacGATTTGGAGGAAGTGACTGATGATGAGCATTGAAGTCGAATATCCTCAACATTTTCACACAGCGACATTCCTGGACTGCACAGTGTTTTTAATAGAGATGAATGATATCAAATTAATTTGCATCACAGGTAATAAATGTAATGGTAGCTGAGCAATGTTAGCTTAAGATAAGTGCGTTGTATATGTGTTTGCTCACTTCTAAATCATATACCATGAAATTATACAGATTTACATCTTCAAACAGAGTTTTCTATTCAATTTTATTAACAAAGTTTGTGTACGAAGTGCCAAGCAGTTTCCTTGTTTAGTATGACGTTTATTTAGAAGGTGCCTTAGAGAGTGTTGGTGTACCAAATAAAACTGGCGCTTGCTTTTGCATAACAGGCAGTTTTTTCATG
>TCONS_00029432
CCGGATTTCCTGCTGCAGAATAGCATTAGCACATAACAGTCTTTCTGCTTTATTAAAGcttgaatttatatattttataagtagCTATCGGTTGCGAGTAATGATGAGCCGCACTCCCGATGCAAGAGCGAGAGATACCCAGACCAAGCAGATCCAGGAGAATATCACCAGTGTGGAAAAACACTTCGGAGATCTTTGCCAACTGTTTGCTGCCTATGTCCGTAAAACTGCACGGCTACGAGATAAAGCAGATCTCCTGGTCAAGGAAATCAACGTTTATGCTGACACCGAGACACCAAACTTAAAATGTGGACTCAAGAATTTTGCAGATCAACTAGCCAAAGTTCAAGACTACCGGCAAGCAGAGGTGGAGAGGCTGGAAGTGAAAGTTATAGAGCCTTTGAAAGCATATGGGAATATTGTCAAAACAAAAAGGGAGGACCTGAAGCAGACCCAGAGTGCAAGGAACAGAGAGGCCAAGCAGATGCAGCAGCTGGAAAGAATGAGGCAGAGAAACCCCTCTGACAGACAGATCATTGTATCCTTGCGATTCACCCCTATTATTTCTGCTTTCACAGGAACTACGTAGCTTGGAGTCATATGATTCTGTAGATTAGTGCAGTCAGTGATAGAAATTATTATATGATTCATCATGTGGGTCAAAGACGACACATTCCTTTTGGTGTCCACATCAAATTTATAATTACTAAAGTGATTTTACATACATAAAATGCTTATTAAATAATAGAGGctacttaaattttaaaaatttctttagtggaaaaaaagtgaaaatatggctataataatgtaattgatata

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006611 protein export from nucleus biological_process
GO:0031503 protein-containing complex localization biological_process
GO:0001731 formation of translation preinitiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0000054 ribosomal subunit export from nucleus biological_process
GO:0051168 nuclear export biological_process
GO:0034470 ncRNA processing biological_process
GO:0051169 nuclear transport biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0033750 ribosome localization biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0071166 ribonucleoprotein complex localization biological_process
GO:0071426 ribonucleoprotein complex export from nucleus biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0071428 rRNA-containing ribonucleoprotein complex export from nucleus biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030689 Noc complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000004436

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029429 False 1020 lncRNA 0.40 4 33258572 33268126
TCONS_00029430 False 1345 mRNA 0.42 8 33258572 33274978
TCONS_00029431 False 1399 mRNA 0.42 9 33258572 33275035
TCONS_00029432 True 822 lncRNA 0.40 4 33270577 33274989

Neighbor

gene id symbol gene type direction distance location
XLOC_014916 trib1 coding downstream 46549 33200266 ~ 33212023 (-)
XLOC_014915 klhl38a coding downstream 171326 33084066 ~ 33087246 (-)
XLOC_014914 azin1b coding downstream 314522 32930476 ~ 32944050 (-)
XLOC_014913 rrm2b coding downstream 330086 32916372 ~ 32928486 (-)
XLOC_014912 mtdha coding downstream 344267 32895379 ~ 32914305 (-)
XLOC_014918 nkd3l coding upstream 93117 33368152 ~ 33370271 (-)
XLOC_014919 BX957357.1 coding upstream 97329 33372364 ~ 33372694 (-)
XLOC_014920 NA coding upstream 507748 33782783 ~ 33786703 (-)
XLOC_014921 si:ch73-302o18.2 coding upstream 553941 33828976 ~ 33835396 (-)
XLOC_014922 otud6b coding upstream 561404 33836439 ~ 33850219 (-)
XLOC_014711 CR382300.3 misc downstream 13529817 19728690 ~ 19728755 (-)
XLOC_014908 CR318628.1 non-coding downstream 608791 32649667 ~ 32649781 (-)
XLOC_014901 CR382336.1 non-coding downstream 927942 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 2174599 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 2292911 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 2423475 30831190 ~ 30835097 (-)
XLOC_014924 CU928445.1 non-coding upstream 702843 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 913157 34188192 ~ 34230285 (-)
XLOC_014928 NA non-coding upstream 1006851 34281886 ~ 34283008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_06756071_06757443 NA coding CI01000054 null 6755809 ~ 6757514 (+)
rainbow trout (Oncorhynchus mykiss) cibar1 fam92a1 misc NC_048582.1 CM023236.2 69784536 ~ 69826841 (-)