XLOC_014921 (si:ch73-302o18.2)


Basic Information

Item Value
gene id XLOC_014921
gene name si:ch73-302o18.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33828976 ~ 33835396 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029435
AGATTCTCCATGGAAACTTGAGGAAAACTTCAAATTGACGAAGCGAGTATCAATGGCAAACGATTCAATCATTAAAGCATTAAAAACCAAATCAAAGTCTCTAAATCTCAGTTCTACGAAAATTATATATCTCCCGGAAGCGCTTGAGAAACTGACGTGGATTTTGGTGTTAAAGCTGAATAATAATTTTCTGTCAAGTCTGCCGTCTGAGTTCATGCGTTTACAGAAGTTGACAGAGCTCAATTTGGGAAACAATGTTCTTGAGGAGGTCCCATCTGTGTTGAAACACCTCTGCTGtctaaataaactttatttatatgGGAACCAAATCAGCTATTTGTCAGCAGAGGTGTTGGAGGGTTTACCAAACCTTGTGCTTCTCAATTTGAATCACAACAAAATCAAAGTCATTCCCTCAGAAATAAAAAGtctcTGTCGCCTACAAAGCATCAGCATCACAGACAATCATTTGGAGCAGATTCCAGCTGAACTGGGTTTGATGAAGAGTCTGACTGAGATTAACTTCACTAATAATAAACTGACTCAAATACCACAACAGTTATGTGATTTATCACAGCTCAGGAGGTTGTATTTGGCCCGAAACAAGCTCACAGAAATACCAGAGggAGTTCTTGGTTGGAAAAACCTGAAGATCTTAGATGTTGCAGGAAATCGTTTATCTGTGTTTCCATTTGATTTTCAGTTTCTCACACTGGATGAACTGTTCTTTGAAGGAAACAGTTTAGTCCCATTCTCACTGATGGAGTCAATTCAAGAGAAAGAGATCCTCACATTAAAGGAACTCTCAGCCAGGCTCATTCTCCAGGAGAGCACTAATATATTGTCAGCGGTATACAGATCTCTGCCAATGTATCCAGAGCTGCAGGACATGCTATCTCACTGGAGTCAATGTGCCTTGTGTTCACAACCCTTCCTCACCACCTGGTTGGAGTGTGTGCAGTTCATCAACACCAGGAAGCACATGGGGATGAAAAGCTCTCAATCTGTTCCAGTGAGGGTTGTGCTGTGCTCCTATGACTGCTTCAACAGGGATGACCACCAATACTATGGACTTGTCcgattaaattaaa
>TCONS_00029436
AAGTTGACAGAGCTCAATTTGGGAAACAATGTTCTTGAGGAGGTCCCATCTGTGTTGAAACACCTCTGCTGtctaaataaactttatttatatgGGAACCAAATCAGCTATTTGTCAGCAGAGGTGTTGGAGGGTTTACCAAACCTTGTGCTTCTCAATTTGAATCACAACAAAATCAAAGTCATTCCCTCAGAAATAAAAAGtctcTGTCGCCTACAAAGCATCAGCATCACAGACAATCATTTGGAGCAGATTCCAGCTGAACTGGGTTTGATGAAGAGTCTGACTGAGATTAACTTCACTAATAATAAACTGACTCAAATACCACAACAGTTATGTGATTTATCACAGCTCAGGAGGTTGTATTTGGCCCGAAACAAGCTCACAGAAATACCAGAGggAGTTCTTGGTTGGAAAAACCTGAAGATCTTAGATGTTGCAGGAAATCGTTTATCTGTGTTTCCATTTGATGAAACAGTTTAGTCCCATTCTCACTGATGGAGTCAATTCAAGAGAAAGAGATCCTCACATTAAAGGAACTCTCAGCCAGGCTCATTCTCCAGGAGAGCACTAATATATTGTCAGCGGTAT
>TCONS_00029437
TTCAAATTGACGAAGCGAGTATCAATGGCAAACGATTCAATCATTAAAGCATTAAAAACCAAATCAAAGTCTCTAAATCTCAGTTCTACGAAAATTATATATCTCCCGGAAGCGCTTGAGAAACTGACGTGGATTTTGGTGTTAAAGCTGAATAATAATTTTCTGTCAAGTCTGCCGTCTGAGTTCATGCGTTTACAGAAGAGGGTTTACCAAACCTTGTGCTTCTCAATTTGAATCACAACAAAATCAAAGTCATTCCCTCAGAAATAAAAAGtctcTGTCGCCTACAAAGCATCAGCATCACAGACAATCATTTGGAGCAGATTCCAGCTGAACTGGGTTTGATGAAGAGTCTGACTGAGATTAACTTCACTAATAATAAACTGACTCAAATACCACAACAGTTATGTGATTTATCACAGCTCAGGAGGTTGTATTTGGCCCGAAACAAGCTCACAGAAATACCAGAGggAGTTCTTGGTTGGAAAAACCTGAAGATCTTAGATGTTGCAGGAAATCGTTTATCTGTGTTTCCATTTGAT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-213 Predicted to be involved in signal transduction. Orthologous to human LRRC69 (leucine rich repeat containing 69).

Ensembl:

ensembl_id ENSDARG00000088316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029435 False 1091 mRNA 0.41 8 33828976 33835396
TCONS_00029436 False 591 nonsense_mediated_decay 0.40 6 33831369 33834435
TCONS_00029437 True 542 nonsense_mediated_decay 0.38 4 33833520 33835368

Neighbor

gene id symbol gene type direction distance location
XLOC_014920 NA coding downstream 42273 33782783 ~ 33786703 (-)
XLOC_014919 BX957357.1 coding downstream 456282 33372364 ~ 33372694 (-)
XLOC_014918 nkd3l coding downstream 458705 33368152 ~ 33370271 (-)
XLOC_014917 fam92a1 coding downstream 553941 33258572 ~ 33275035 (-)
XLOC_014916 trib1 coding downstream 616953 33200266 ~ 33212023 (-)
XLOC_014922 otud6b coding upstream 1043 33836439 ~ 33850219 (-)
XLOC_014923 elmo1 coding upstream 52193 33887589 ~ 34063567 (-)
XLOC_014924 CU928445.1 coding upstream 142482 33977878 ~ 33977994 (-)
XLOC_014925 rp9 coding upstream 238481 34073877 ~ 34089305 (-)
XLOC_014926 si:dkey-184p18.2 coding upstream 256156 34091552 ~ 34117056 (-)
XLOC_014711 CR382300.3 misc downstream 14100221 19728690 ~ 19728755 (-)
XLOC_014908 CR318628.1 non-coding downstream 1179195 32649667 ~ 32649781 (-)
XLOC_014901 CR382336.1 non-coding downstream 1498346 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 2745003 31079326 ~ 31083973 (-)
XLOC_014927 NA non-coding upstream 352796 34188192 ~ 34230285 (-)
XLOC_014928 NA non-coding upstream 446490 34281886 ~ 34283008 (-)
XLOC_014929 NA non-coding upstream 825316 34660712 ~ 34687552 (-)
XLOC_014942 BX957241.1 non-coding upstream 1585439 35420835 ~ 35420951 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G233593 NA non-coding CI01000054 null 6438594 ~ 6438880 (-)