XLOC_014922 (otud6b)


Basic Information

Item Value
gene id XLOC_014922
gene name otud6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33836439 ~ 33850219 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029438
GAGTCCATGCGTATGTTTATCATGACTGATTATTATGATCTGAACTGATTATTACGTGCTAAAGCTATTGTAAATCTTGTTGAGCGATAAGTTAAAATATCAGTGAATGGTGTATTTGGCGTTTAGCTTTATTTGCGCTGTTGTTCAGAATATATATCACATTTAGTCATGGAGGAAGTGGAGACAGCAGAGGAGCAGTTAGCCAAACAGCATCGCAAGGAAAAGAAAGACCTGCAAGCAAAAATACAAAGCATGAAAAACGCAGTTCCCAAAAATGACAAGAAGAGGAGGAAACAGCTGACAGAAGACATCGCCAAACTAGAGGCCGAACTCTctcaaaaacatgaaaatgagcTCAAACTTCAGAACACTTCTTCAGTGGAAGAGGTTTCAGTTGCATTGGATTCTATGAGTGTAGCAAATCATGAGGAACAATCTGATCCAAGCAAGCAAAGTCGGACATCCAAAGCCCAGAAGAGGCGGgACAAGAAGGCTGCTCTTGAGAAGGAGCGAGAGATGCGGATTGCGGAGGCAGAGGTGGAGAATCTCAGCGGCTCTCGTCATCAGGAGGGTCTAAAGCTGCGTGAGAAGCTGGTGGAGAGACATCTGCAGATTAAAGAGATCTCTTCTGATGGCCACTGTATGTACCGCGCTGTGGAGCATCAGCTGACGGAGAGAGGACTCGCTCTCGGTCTGAAAGAGCTTCGGGATCAAACTGCTCAGTACATGAGGAGCCATGCAGATGACTTCATGCCCTTTCTTACAAACCCTAATACAGGAGATATGTACACTGCAGAGGAGTTTGAGAAATACTGCACTGATGTTGCAGACACCGCTGCATGGGGCGGACAGTTAGAGTTGAAAGCCCTTTCCCAGGTCCTCCAGCTACCCCTAGAGGTCATCCAGGCAGATTCCCCGTGTATTACTATTGGTGAAGAATACGACAAGCCAAAAATCACACTCATTTATATGCGGCATGCGTATGGACTTGGAGAGCATTACAACTCTGTGGAGCCTCTGAAAGATTTGGCAAACGAGGAAGAGGGCTGACCCGGTCACTGACACGCATTAATTTATGCATCTGTGCATAATTAGCCTGTAGAAATGGGCCGTGTGGAATTGGATTCCATTTTGCTAGGATCGGCAGAATTGAGGTTGTTCGGTCAGATGCTCACTGAAGATCCTGAAATAACCCCCTCTGGTCACTTCAGTTGCAGTGGACAAACTTAATATAACAGAGTTGTTCATGAATAAACTGTGTGCTTTGTGTTCTTATAAAACCACATATCTGCAAGTCATTTGCTCTAAAAAGCTGCTGGATCGGGCTCATAGGCCATTGaataaaaactttattaataa
>TCONS_00029439
GAAGTCTGTGCTCCCATTGAGTCCATGCGTATGTTTATCATGACTGATTATTATGATCTGAACTGATTATTACGTGCTAAAGCTATTGTAAATCTTGTTGAGCGATAAGTTAAAATATCAGTGAATGGTGTATTTGGCGTTTAGCTTTATTTGCGCTGTTGTTCAGAATATATATCACATTTAGTCATGGAGGAAGTGGAGACAGCAGAGGAGCAGTTAGCCAAACAGCATCGCAAGGAAAAGAAAGACCTGCAAGCAAAAATACAAAGCATGAAAAACGCAGTTCCCAAAAATGACAAGAAGAGGAGGAAACAGCTGACAGAAGACATCGCCAAACTAGAGGCCGAACTCTctcaaaaacatgaaaatgagcTCAAACTTCAGAACACTTCTTCAGTGGAAGAGGTTTCAGTTGCATTGGATTCTATGAGTGTAGCAAATCATGAGGAACAATCTGATCCAAGCAAGCAAAGTCGGACATCCAAAGCCCAGAAGAGGCGGGTGGTGCTCTTTAACAGGCTTTATAAGTGGGAACGAACATTCAGGTAACAGGTGTTGCTAGACGGAAGGGAGCACATACAGTTTTGACCACacactttcaaacacacacactttcaaacacacacactttcaaacgCACACACTTTCAAacgcacacacccacaaacacaaacaaacgctCACGCGCATTCACACAGAGagccacacacattcattcatgcttTAGCATGacggtttgttttgtttgtaagtCACGATATGTGGCAGTGTTTGACTTCTACAGACGGAAACTTACCTGGAAGAAAATTTGTGACTATTGGAGTTTGCAACTGCAATAAACGTAAACATCTTCG

Function

symbol description
otud6b Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including OTUD6B (OTU deubiquitinase 6B).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-974 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including OTUD6B (OTU deubiquitinase 6B).

Ensembl:

ensembl_id ENSDARG00000102705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029438 False 1359 mRNA 0.45 7 33836439 33850201
TCONS_00029439 True 854 processed_transcript 0.41 4 33847134 33850219

Neighbor

gene id symbol gene type direction distance location
XLOC_014921 si:ch73-302o18.2 coding downstream 1043 33828976 ~ 33835396 (-)
XLOC_014920 NA coding downstream 49736 33782783 ~ 33786703 (-)
XLOC_014919 BX957357.1 coding downstream 463745 33372364 ~ 33372694 (-)
XLOC_014918 nkd3l coding downstream 466168 33368152 ~ 33370271 (-)
XLOC_014917 fam92a1 coding downstream 561404 33258572 ~ 33275035 (-)
XLOC_014923 elmo1 coding upstream 37370 33887589 ~ 34063567 (-)
XLOC_014924 CU928445.1 coding upstream 127659 33977878 ~ 33977994 (-)
XLOC_014925 rp9 coding upstream 223658 34073877 ~ 34089305 (-)
XLOC_014926 si:dkey-184p18.2 coding upstream 241333 34091552 ~ 34117056 (-)
XLOC_014927 NA coding upstream 337973 34188192 ~ 34230285 (-)
XLOC_014711 CR382300.3 misc downstream 14107684 19728690 ~ 19728755 (-)
XLOC_014908 CR318628.1 non-coding downstream 1186658 32649667 ~ 32649781 (-)
XLOC_014901 CR382336.1 non-coding downstream 1505809 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 2752466 31079326 ~ 31083973 (-)
XLOC_014928 NA non-coding upstream 431667 34281886 ~ 34283008 (-)
XLOC_014929 NA non-coding upstream 810493 34660712 ~ 34687552 (-)
XLOC_014942 BX957241.1 non-coding upstream 1570616 35420835 ~ 35420951 (-)

Expression


Co-expression Network