XLOC_014925 (rp9)


Basic Information

Item Value
gene id XLOC_014925
gene name rp9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34073877 ~ 34089305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029447
CATATGTGCCTTTGCAGCCACAACTAAACAAACATTCTAAGTTTTTAACCTAAGATGTGATTATACATTCAAAAGTAGCAATCCTCAATAAGTGTACAATGTCGGACCGCAAACGAAGACGAGAGCACAGCGAGGACAAACGTGAACGAAAGAAACACAAGGAGACAAGACAAGATGAAGATAAATACAAGCACCAAACCAAAAAACTGATCCATGAGGTGCAGAAACTCAAGCATGTGGAGACTTTCTATGAAAATGCTCCTCCTGGTTTTATAAAGGAAGACACCGAGAAACCAGAGGACTGTATTCCTGATGACCCCGGCAATGAGGATGCCAGGAGCTTCTTGGCTCACGCTCCCACCAAAGGCCTGTGGATGCCTCTGGGGAAAGAGGTGAAGGTCATGCAGTGCTGGAGATGTAAGAAGTACGGCCACAGAACAGGAGACAAAGAATGTCCTTTCTTCATTAAAGGCAACCAGAAACTGGAGCAGTTCAGGGTGGCACATGAAGATCCAATGTATGATATCATCCGAGAAAACAAACGTAATGAAAAAGAGACAAGGATCCAGCAGTTAAAACAGCTGCTTCAGGACACAACCTCCGACTCAGACTCCacttcttcttcatcatcatcatcctcctcctctGATCACAgccggaagaagaagaagaagaaaaaggagaagaggaagaaagaaaagaagaaacacaagaagaaaaagaagaagcagAAGGTCAGGGCCGGCAGTGACTCAGACTCCGACTGAAGCAGGATTCAACACTCTGACTGTCTCATAAAGTCTGCAGTGTCTGTCGGCCGATCAGAGGAACAGAACAGGCTTCATGCGTTCCCCAGGACAACACGCATCTGCTCAATAATGCATGAGTGCATTTAATCCCCTCTGTCGCATGCAATGCTTAGGATATATACATGTCTCTATCTGATTCCCCATAGCCGGTCTTCATCAGACTGTTAATATGTTTGGCCCATTGGATTGAAGTCTGTAGTGAACGGAGTTTTTGAATGTATGTTGATTTACATTTTACTGAATGTGTCACTGTGAAAATAACCGACGAGAGCTTATGATACATGCCATCTGCTGCTGTGAACAGTGACGTAAATAAATCAGTGACTGTC
>TCONS_00029448
ATGTCGGACCGCAAACGAAGACGAGAGCACAGCGAGGACAAACGTGAACGAAAGAAACACAAGGAGACAAGACAAGATGAAGATAAATACAAGCACCAAACCAAAAAACTGATCCATGAGGTGCAGAAACTCAAGCATGTGGAGACTTTCTATGAAAATGCTCCTCCTGGTTTTATAAAGGAAGACACCGAGAAACCAGAGGACTGTATTCCTGATGACCCCGGCAATGAGGATGCCAGGAGCTTCTTGGCTCACGCTCCCACCAAAGGCCTGTGGATGCCTCTGGGGAAAGAGGTGAAGGTCATGCAGTGCTGGAGATGTAAGAAGTACGGCCACAGAACAGGAGACAAAGAATGTCCTTTCTTCATTAAAGGCAACCAGAAACTGGAGCAGTTCAGGGTGGCACATGAAGATCCAATtcctcctctGATCACAgccggaagaagaagaagaagaaaaaggagaagaggaagaaagaaaagaagaaacacaagaagaaaaagaagaagcagAAGGTCAGGGCCGGCAGTGACTCAGACTCCGACTGAAGCAGGATTCAACACTCTGACTGTCTCATAA
>TCONS_00029449
TTCATATGTGCCTTTGCAGCCACAACTAAACAAACATTCTAAGTTTTTAACCTAAGATGTGATTATACATTCAAAAGTAGCAATCCTCAATAAGTGTACAATGTCGGACCGCAAACGAAGACGAGAGCACAGCGAGGACAAACGTGAACGAAAGAAACACAAGGAGACAAGACAAGATGAAGATAAATACAAGCACCAAACCAAAAAACTGATCCATGAGGTGCAGAAACTCAAGCATGTGGAGACTTTaagaaaaaactgACCCGACGCTATCATCTAAAACAACAAACATGACTTCGGCAAAGACCATGAATATCGCGCACACCCTATCAGAGATTTTTGTAAATGCGATAGATCTCAATTTTTCGAGTGAGCATTTTTCAATACATGCAGGACTGCTTTTGCAGGAAGACACCGAGAAACCAGAGGACTGTATTCCTGATGACCCCGGCAATGAGGATGCCAGGAGCTTCTTGGCTCACGCTCCCACCAAAGGCCTGTGGATGCCTCTGGGGAAAGAGGTGAAGGTCATGCAGTGCTGGAGATGTAAGAAGTACGGCCACAGAACAGGAGACAAAGAATGTCCTTTCTTCATTAAAGGCAACCAGAAACTGGAGCAGTTCAGGGTGGCACATGAAGATCCAATGTATGATATCATCCGAGAAAACAAACGTAATGAAAAAGAGACAAGG

Function

symbol description
rp9 Predicted to act upstream of or within RNA splicing. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor).

GO:

id name namespace
GO:0008380 RNA splicing biological_process
GO:0005785 signal recognition particle receptor complex cellular_component
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041114-42 Predicted to act upstream of or within RNA splicing. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor).

Ensembl:

ensembl_id ENSDARG00000098942

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029447 False 1138 mRNA 0.44 6 34073877 34089303
TCONS_00029448 False 579 mRNA 0.47 6 34074217 34089205
TCONS_00029449 True 692 nonsense_mediated_decay 0.43 4 34080946 34089305

Neighbor

gene id symbol gene type direction distance location
XLOC_014923 elmo1 coding downstream 10310 33887589 ~ 34063567 (-)
XLOC_014924 CU928445.1 coding downstream 95883 33977878 ~ 33977994 (-)
XLOC_014922 otud6b coding downstream 223658 33836439 ~ 33850219 (-)
XLOC_014921 si:ch73-302o18.2 coding downstream 238481 33828976 ~ 33835396 (-)
XLOC_014920 NA coding downstream 287174 33782783 ~ 33786703 (-)
XLOC_014926 si:dkey-184p18.2 coding upstream 2247 34091552 ~ 34117056 (-)
XLOC_014927 NA coding upstream 98887 34188192 ~ 34230285 (-)
XLOC_014928 NA coding upstream 192581 34281886 ~ 34283008 (-)
XLOC_014929 NA coding upstream 571407 34660712 ~ 34687552 (-)
XLOC_014930 elp2 coding upstream 602340 34691645 ~ 34742440 (-)
XLOC_014711 CR382300.3 misc downstream 14345122 19728690 ~ 19728755 (-)
XLOC_014919 BX957357.1 non-coding downstream 701183 33372364 ~ 33372694 (-)
XLOC_014908 CR318628.1 non-coding downstream 1424096 32649667 ~ 32649781 (-)
XLOC_014901 CR382336.1 non-coding downstream 1743247 32330513 ~ 32330630 (-)
XLOC_014942 BX957241.1 non-coding upstream 1331530 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 2621193 36710498 ~ 36731093 (-)

Expression


Co-expression Network