XLOC_014928


Basic Information

Item Value
gene id XLOC_014928
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34281886 ~ 34283008 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030297
GTCACATTGTGGAAAACTGGATGGATTTAGACTTCTTACATGCAAGTAATTAAATCCAGAAAGACGGTTCCTTGAGTTAAGTTACAGTAAAATAGCAATAGTTGAGCTACTGTACAGTGAACTGTAGAATTACTGAAAGTGTAAAGAtgctttacagtatatttattttatcttgctgTAAATGATAATGTAGGAACTTCTGTAAGCACATGACGTTTCAAACGTTAATTTACATAAAGACGATTATTCAATGTCTGACAGAAAAATATAGGAGGTATTGCAGATTAGCAAATTATAACATTAAACAGACGTCTGagtgatttgtttgtgttgatgtAGAATGCACTTTTGTCAATACAGCTTAGGTTAgatacatgtaatattaatacagcAATGTTTTCTTCTGTTCATTTGGTGATACATTTATGAAAGTATAATTTTGAGCACACAAATCACAGAGGTAACATGACTTGTCTGGTTGTTATAGAGAAGGAAGCACACATGTTTGTGTGTTAGCTGATGCAGAGTGACTGAACAAATGCTACcatcatatttgtttaatattgttgtttCAAACTGCTATTAcaacaatttatttaatgttgatttatatgCCATTTCTGGGCTGGAGCAGGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAAGTGTGCTGTTAAATGACTTCTTTATTAAGAGCTTTGCAAAATCTGAAATGTCCTCAGACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0016485 protein processing biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030297 True 1123 lncRNA 0.37 1 34281886 34283008
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Neighbor

gene id symbol gene type direction distance location
XLOC_014927 NA coding downstream 51601 34188192 ~ 34230285 (-)
XLOC_014926 si:dkey-184p18.2 coding downstream 164830 34091552 ~ 34117056 (-)
XLOC_014925 rp9 coding downstream 192581 34073877 ~ 34089305 (-)
XLOC_014923 elmo1 coding downstream 218319 33887589 ~ 34063567 (-)
XLOC_014924 CU928445.1 coding downstream 303892 33977878 ~ 33977994 (-)
XLOC_014929 NA coding upstream 377704 34660712 ~ 34687552 (-)
XLOC_014930 elp2 coding upstream 408637 34691645 ~ 34742440 (-)
XLOC_014931 ctnnal1 coding upstream 468679 34751687 ~ 34873566 (-)
XLOC_014932 sla1a coding upstream 630847 34913855 ~ 34927201 (-)
XLOC_014933 ndrg1a coding upstream 676959 34959967 ~ 34979837 (-)
XLOC_014711 CR382300.3 misc downstream 14553131 19728690 ~ 19728755 (-)
XLOC_014920 NA non-coding downstream 495183 33782783 ~ 33786703 (-)
XLOC_014919 BX957357.1 non-coding downstream 909192 33372364 ~ 33372694 (-)
XLOC_014908 CR318628.1 non-coding downstream 1632105 32649667 ~ 32649781 (-)
XLOC_014942 BX957241.1 non-coding upstream 1137827 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 2427490 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 2545943 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2944902 37227910 ~ 37228025 (-)

Expression

Expression of XLOC_014928 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network