XLOC_014931 (ctnnal1)


Basic Information

Item Value
gene id XLOC_014931
gene name ctnnal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34751687 ~ 34873566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029454
TGCTATATTGCATGTACATGAGCAGTCCGTCATTCAGGAGCGAGTGCCCGTGGATTTTAGCGCTCTCATCGCCTGCTTTTGAACTAAACCTAACACACGCTTGCGGCATTGGGAGACCAGCAAACTCGGTGTTGTTGTGAGCTCCAGCGGGGGTCGGATCGGCGGGAATGGCTTCGTCTCCGTGCGGCGGTGGGAACTTTGATTGCGGGTTGGAGATCCAAACTCGCTCGGTGGAGCAAACGCTCATCCCGCTCGTGTCTCAGATTACCACGCTGATCAATCACAAAGACAAGCTGAAGAAGACTGAGAAGACTTTACGGGCCATTCAGAGAGTGGGCCAGGCGGTCAGTGTTGCAGTCGGACGCTTCGTGGCGGTGGGTGAAGCCATTGCAGCGGAGAATGAAGACTTGAAGGAAGAGATGGGACTGGCTTGCTTCGAGGCTCGGAGAGCAGGCACAGGGATCGCTCAGCTGACGGATGTGTCTAGTCTGGAGCATTGTGATGGTGATGGCCGCAGCACTGTATTCAGTGACAGGACCGGCATGGTGAAAGCTGCCCGCATGCTGCTGTCCTCCGTTACCAAAGTCCTTGTGCTCGCAGACTGCATCGTTATCAAGCAGATCATAAGCTCACGCAACAAAGTGCTGGTTACCCTGGAGCAGctggagagagtcagcacttttCAGGAATTTGTCCAAATCTTCAGCCAATTTGGGAACGAGATGGTAGAGTTTGCCCATCTCACAGGAGACAGACAGAATGATCTGAAGGATGAAAAAAAGCGAGCTCGAATGGCTGCCGCACGTGCTGTGCTAGAGAAATGCACCATGATGCTTCTCACAGCCTCCAAGACTTGTCTCAGACATCCAGACTGTGAGTCGGCGCGGATCAACAAAGAAGCGGTCTTCCAGCGGATGCGTATCGCCCTGGAGCAGGTCATTGAGATTGTGACAGACACGAGGAGCAGCGGAGAGGCCAAAGCGCTTCCTGTCAGCATCTACGCTGGGATTAAAGACTTTAAGgttaAAGTGGAGGCTCTGAGGGACTCTTTGTATGGTGTGTCCTGTGAAGCTGTAGCGGCTCAGCTAGAAGCTCTTGTGGAGAAAACTGAAGACTTTACAGACTCTGCGTACACCAGGCACGAGCAGAGAGAGACAATCATACAGCTCTGCCAGATCACACGTCAAGAGACCAAACAGCTCATCAACACATGGAGACATGCGCAATCGCTTAAAGCCAAAGAGGCCACAGATGAGATGGAGCTCTCTATTTTGAAGACTTGTCAGTGTGTCAGTGATCTCAGGCAAGAGCTTCATAAGGTAGCAGTAGGGAGGGCCACGGAGCTGCTGAAGCTGCATTCAGATCATCTGGTGCTGCAGGCCCTGAAAGCCTCTGGTGGGGACGGAAACCTTGAGGCCGTGGCTGACTACGCCAGCACACTGACTGAACACAACGAACAGCTGGTGGAGACTTGTCGTTTGCTCTGCCACGTCTCGGGGACAGAGCCGCTGGAGATCACCTGCATTCATGCTGAGGAAACCTTTCGTGTCATTGGTCCACAGATCATCTCAGCGGCACAGACTCTTGCTCTGCACCCCACCAGCAAGATAGCCAAAGAGAACCTGGATGTATTTTGTGAGGCCTGGGAGTCCCAGCTCTGCGACATGGCGATCCTATTGAAGGAGATTAATGATGTGTTTGAGGGCCGCAGAGgtgataAGAAAACATATCTGTCTTTACCAAGGCCAGGGAAACACTCTGCTAACCTGAAGACAGTCAAGGCTGCCAAACTTGATGCTGAGGAGCAAACCACCATCGCTAAGCTGGGCCTGGAGCTGTGTCTCCTCACCTCAGACGTGGACTCGGAGGTGGAGCGCTGGGATGAGCAGGACCACGAGATGGTGCGACTCTGTCAGATCATATCCAGCATGGCTTACTCCATGTACCTCTTCACCAGGGGTGAAGGCCTGTTAAAGACAACTTCGGATTTATTCCACCAAGCTGAGGTGTTGTCAGACCAGGGTCTCCAGCTATGCCCAGTCCTCCAGTCTCTCTCCACACAGCTGCTGGATGAAGACCGAATGCTTATTATATCTGAAACAGAGAAGCTGTCAAGTGCATGTCAACAACTACAGGCCTGTGCAAAGACTCCCGTTCAGGGCAAGAGCGCCATCTTCCAGAAGGTGGACTCATCCATACAGAATACCAAAGGCATCTTGATATTGGTGGTCTACTTACTGCCCATCTGTAATAAACTCATCAGAAAGTGTAAGTCAGAGCGCAGCTGCCTGGCTTCACCCCAGCACTGGAGGGAGAAACAGTTGAGCGCGCCCGTCAGCGAGGAAACTCTCAACGGCAAAGGCTCCAACGGATTTGGGGTCAAATCCCTGGAGCAGCACATGGCCAATCTCACATTCCTGGAGAGCAAATAA

Function

symbol description
ctnnal1 Predicted to enable actin filament binding activity and cadherin binding activity. Predicted to act upstream of or within Rho protein signal transduction and cell adhesion. Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human CTNNAL1 (catenin alpha like 1).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0007155 cell adhesion biological_process
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-507 Predicted to enable actin filament binding activity and cadherin binding activity. Predicted to act upstream of or within Rho protein signal transduction and cell adhesion. Predicted to be located in cytoplasm and cytoskeleton. Orthologous to human CTNNAL1 (catenin alpha like 1).

Ensembl:

ensembl_id ENSDARG00000018162

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029454 True 2432 mRNA 0.53 19 34751687 34873566
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_014930 elp2 coding downstream 9247 34691645 ~ 34742440 (-)
XLOC_014929 NA coding downstream 64135 34660712 ~ 34687552 (-)
XLOC_014928 NA coding downstream 468679 34281886 ~ 34283008 (-)
XLOC_014927 NA coding downstream 521402 34188192 ~ 34230285 (-)
XLOC_014926 si:dkey-184p18.2 coding downstream 634631 34091552 ~ 34117056 (-)
XLOC_014932 sla1a coding upstream 40289 34913855 ~ 34927201 (-)
XLOC_014933 ndrg1a coding upstream 86401 34959967 ~ 34979837 (-)
XLOC_014934 si:rp71-45k5.2 coding upstream 120867 34994433 ~ 34995629 (-)
XLOC_014935 zgc:113424 coding upstream 124463 34998029 ~ 34999379 (-)
XLOC_014936 si:rp71-45k5.4 coding upstream 127687 35001253 ~ 35010342 (-)
XLOC_014711 CR382300.3 misc downstream 15022932 19728690 ~ 19728755 (-)
XLOC_014924 CU928445.1 non-coding downstream 773693 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 964984 33782783 ~ 33786703 (-)
XLOC_014942 BX957241.1 non-coding upstream 547269 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 1836932 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1955385 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2354344 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2649011 37522577 ~ 37569033 (-)

Expression

Expression of XLOC_014931(ctnnal1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Expression of XLOC_014931(ctnnal1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_05926683_05953807 CTNNAL1 coding CI01000054 null 5926683 ~ 5953955 (+)