XLOC_014933 (ndrg1a)


Basic Information

Item Value
gene id XLOC_014933
gene name ndrg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34959967 ~ 34979837 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029456
AAAGTGCGCACACAAGAGCTTTACTTCCAATCGGATCTTACACTCTTACATTCTCATCACTACCACTAATTATTATCAGCAGCCATGGTTCTGGAAGACTCCGATATGGAATTAGTTTTCGAGATTGAAGTTGCTGAACATGACGTGGAGACGCCGTATGGCAAAATCCACTGTACCATGAAAGGAGTTCCTAAGGCTGACCGGCCCGTCATCCTTACCTTCCACGATATTGGACTGAACCACAAAAGCTGCTTCGACACCTTGTTCAGCCATGAAGATATGCAGGAGATCATGCAGCACTTCGCTGTTTGTCATGTCGATGCCCCAGGACAGCAAGAAGGAGCCAATACATTCTCCACTGGATATGAGTACCCGTCCATGGATCAGCTCTCTGAGACTCTTCCATCAATCCTGAAACATTTTGGACTGAAGAGTGTGATCGGCATGGCTATTGGAGCCGGTGCTTACATCCTTTCTAAGTTTGCTTTGGATTACCCTGCTATGGTGGAGGGCCTCGTGCTTATAAACATCAACCCATGTGCTGAAGGCTGGATGGACTGGGCCGCACATAAAATCTCTGGCTGGACTCATGCCATGCCTGACATGATCATCTCTCACCTGTTTGGAAAGGAGGAAATCCAGCAGAACCATGACCTCATTGGCAGGTACCGTCACCACATTGTGAATGAAATGAACCAGTACAATCTGCAGCTCTTTGTCAAGTCATACACTAGCCGAAGAGACCTGGAAATTGAGAGGCCTGTAGCTGGTAGCCACATTAATGCCAGAACCCTGAAGTGTCCTGCACTACTGGTGGTTGGAGACAGTTCTCCTGCTGTGGATGCTGTGGTCGAGTGCAACACAAAGCTGGACCCGACCAAAACCACACTGCTAAAGatggctgactgtggaggcctgcCTCAGGTCGACCAGCCTGGGAAGCTAACAGAGGCTTTCAAGTACTTCATTCAGGGCATGGGCTACATGCCCTCTGCCAGTATGACCCGCCTGGTCCGCTCCCGCACAGCATCCGGATCCAGCATCACCTCCTTTGACGGCAACCGCAGCAGGTCACACACCAACGAGGGCAACCGCAGCCGCTCGCACACCAACGAGGGTCGAGCCCGAGCTCACACCTCCGAAAACCAGCGCGGGCGCTCGCACACCGACAACATGGACAGTTCTGTGGACCAGACCCCCAAGTCCACCGAAGTGTCCTGTTAaactcacacacatgcattatAAACCAATCAGTTCTGACTGTGCTGCGCTGCCACTaactcacacacgcacaccgTTTCCCTCTCATTTCAGTAGTCGGAGAGCATTTACGCCAAAGTGCGCTTAAGACTAGATTTCCTCAGGGGGAAGCGCTGTGTTTCTGAAGGAGTGGATGgagaatttcttttctttttccaccCTGCACAATGGCTGTcttgttggtggtggtggtgttgttgttgttagagGCAATGCAGCACAGAGACATCGTGATGGTCATCATCCAAGTAAGAtggccacgtttttttttttttttttttggttgttgatCTGTAGTCTGCAATTTGTTTTCACTCATTATACCACACTTTTACATGCTAGTTTGAGCGCATAATTAATTGTATAATCTGTATATGCTGAATGGACCTTGTTGAAGGGATTGTTTGACCACAGAGTAGagatgaatttctttttttttttttttctttctttttgttcatGATGCTAACCTTCCTAAGTGTTGATCTGCGTTTTCCATGTTGGGAGTGTTCTGTTATTTTGGGTTGTATTTGTAACATTGTGATTGACATTTcttaaaagtgattttaaatgatttgtatGGGGTCAAATGAATCTTGAGATTAGTTCAAATTTAACCAATTTGTAGATATAAGAATATGAGAAAATGGCTGTATATgagtattataatattttgtttgtttataacttTTATGACTGATGATGATTTCTATGCAATCAAGCACAACAGAACAAAATGTGCCATGGATTCCTCTACTGGGACTGgatgctttttttgttttctttttttttggctttgaaAGAGTGAAAGATCGCCGGGAAAGAGAAAGAGATGAATATAAGCAACTCACCTGCTCttccccatacacacacatacacatatatatacacacacacacacacatacattaaaaCAAATGCTTGCAGCTTGGTAAGGCACCTCGCTTTGTAAAGATGTAAAACAACTTGATGCACAGCTTTTTTAATGGAATAACagtttgtatttattaaaaaaaggaaaataaaaagctGGTTACTTGA
>TCONS_00029457
GTAGTCAATTGTCTTCAAGCTCTTCAAGAACTTTTCAGCTTTGTTGGACTTTGTCGTTTTTATTTTTCCGGACATTAAACGGGTGTCCTCGTTGAGAATGGACGATATCCAGGTTGAGTCGAAACCTCTGATTGTGGACAAGGATTTGCAGGGGCTGAGGGAGGCTGTCCAGAAATTGGAGCTCAAGGAACATGACGTGGAGACGCCGTATGGCAAAATCCACTGTACCATGAAAGGAGTTCCTAAGGCTGACCGGCCCGTCATCCTTACCTTCCACGATATTGGACTGAACCACAAAAGCTGCTTCGACACCTTGTTCAGCCATGAAGATATGCAGGAGATCATGCAGCACTTCGCTGTTTGTCATGTCGATGCCCCAGGACAGCAAGAAGGAGCCAATACATTCTCCACTGGATATGAGTACCCGTCCATGGATCAGCTCTCTGAGACTCTTCCATCAATCCTGAAACATTTTGGACTGAAGAGTGTGATCGGCATGGCTATTGGAGCCGGTGCTTACATCCTTTCTAAGTTTGCTTTGGATTACCCTGCTATGGTGGAGGGCCTCGTGCTTATAAACATCAACCCATGTGCTGAAGGCTGGATGGACTGGGCCGCACATAAAATCTCTGGCTGGACTCATGCCATGCCTGACATGATCATCTCTCACCTGTTTGGAAAGGAGGAAATCCAGCAGAACCATGACCTCATTGGCAGGTACCGTCACCACATTGTGAATGAAATGAACCAGTACAATCTGCAGCTCTTTGTCAAGTCATACACTAGCCGAAGAGACCTGGAAATTGAGAGGCCTGTAGCTGGTAGCCACATTAATGCCAGAACCCTGAAGTGTCCTGCACTACTGGTGGTTGGAGACAGTTCTCCTGCTGTGGATGCTGTGGTCGAGTGCAACACAAAGCTGGACCCGACCAAAACCACACTGCTAAAGatggctgactgtggaggcctgcCTCAGGTCGACCAGCCTGGGAAGCTAACAGAGGCTTTCAAGTACTTCATTCAGGGCATGGGCTACATGCCCTCTGCCAGTATGACCCGCCTGGTCCGCTCCCGCACAGCATCCGGATCCAGCATCACCTCCTTTGACGGCAACCGCAGCAGGTCACACACCAACGAGGGCAACCGCAGCCGCTCGCACACCAACGAGGGTCGAGCCCGAGCTCACACCTCCGAAAACCAGCGCGGGCGCTCGCACACCGACAACATGGACAGTTCTGTGGACCAGACCCCCAAGTCCACCGAAGTGTCCTGTTAaactcacacacatgcattatAAACCAATCAGTTCTGACTGTGCTGCGCTGCCACTaactcacacacgcacaccgTTTCCCTCTCATTTCAGTAGTCGGAGAGCATTTACGCCAAAGTGCGCTTAAGACTAGATTTCCTCAGGGGGAAGCGCTGTGTTTCTGAAGGAGTGGATGgagaatttcttttctttttccaccCTGCACAATGGCTGTcttgttggtggtggtggtgttgttgttgttagagGCAATGCAGCACAGAGACATCGTGATGGTCATCATCCAAGTAAGAtggccacgtttttttttttttttttttggttgttgatCTGTAGTCTGCAATTTGTTTTCACTCATTATACCACACTTTTACATGCTAGTTTGAGCGCATAATTAATTGTATAATCTGTATATGCTGAATGGACCTTGTTGAAGGGATTGTTTGACCACAGAGTAGagatgaatttctttttttttttttttctttctttttgttcatGATGCTAACCTTCCTAAGTGTTGATCTGCGTTTTCCATGTTGGGAGTGTTCTGTTATTTTGGGTTGTATTTGTAACATTGTGATTGACATTTcttaaaagtgattttaaatgatttgtatGGGGTCAAATGAATCTTGAGATTAGTTCAAATTTAACCAATTTGTAGATATAAGAATATGAGAAAATGGCTGTATATgagtattataatattttgtttgtttataacttTTATGACTGATGATGATTTCTATGCAATCAAGCACAACAGAACAAAATGTGCCATGGATTCCTCTACTGGGACTGgatgctttttttgttttctttttttttggctttgaaAGAGTGAAAGATCGCCGGGAAAGAGAAAGAGATGAATATAAGCAACTCACCTGCTCttccccatacacacacatacacatatatatacacacacacacacacatacattaaaaCAAATGCTTGCAGCTTGGTAAGGCACCTCGCTTTGTAAAGATGTAAAACAACTTGATGCACAGCTTTTTTAATGGAATAACagtttgtatttattaaaaaaaggaaaataaaaagctGGTTACTTGA
>TCONS_00029458
TTCAAGCTCTTCAAGAACTTTTCAGCTTTGTTGGACTTTGTCGTTTTTATTTTTCCGGACATTAAACGGGTGTCCTCGTTGAGAATGGACGATATCCAGGTTGAGTCGAAACCTCTGATTGTGGACAAGGATTTGCAGGGGCTGAGGGAGGCTGTCCAGAAATTGGAGCTCAAGGAACATGACGTGGAGACGCCGTATGGCAAAATCCACTGTACCATGAAAGGAGTTCCTAAGGCTGACCGGCCCGTCATCCTTACCTTCCACGATATTGGACTGAACCGTAAGCCTTTACATATCTCcagccatataatgttttttatttgtttaatcataAAGCTGAAATTGTATACATAATGCTTCTGAAATAGACAAAAGCTGCTTCGACACCTTGTTCAGCCATGAAGATATGCAGGAGATCATGCAGCACTTCGCTGTTTGTCATGTCGATGCCCCAGGACAGCAAGAAGGAGCCAATACATTCTCCACTGGATATGAGTACCCGTCCATGGATCAGCTCTCTGAGACTCTTCCATCAATCCTGAAACATTTTGGACTGAAGAGTGTGATCGGCATGGCTATTGGAGCCGGTGCTTACATCCTTTCTAAGTTTGCTTTGGATTACCCTGCTATGGTGGAGGGCCTCGTGCTTATAAACATCAACCCATGTGCTGAAGGCTGGATGGACTGGGCCGCACATAAAATCTCTGGCTGGACTCATGCCATGCCTGACATGATCATCTCTCACCTGTTTGGAAAGGAGGAAATCCAGCAGAACCATGACCTCATTGGCAGGTACCGTCACCACATTGTGAATGAAATGAACCAGTACAATCTGCAGCTCTTTGTCAA

Function

symbol description
ndrg1a Predicted to be involved in signal transduction. Predicted to act upstream of or within mast cell activation; peripheral nervous system myelin maintenance; and regulation of cell population proliferation. Predicted to be active in cytoplasm. Is expressed in several structures, including integument; otic placode; pronephric mesoderm; pronephros; and visual system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4D. Orthologous to human NDRG1 (N-myc downstream regulated 1).

GO:

id name namespace
GO:0032287 peripheral nervous system myelin maintenance biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0045576 mast cell activation biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-34 Predicted to be involved in signal transduction. Predicted to act upstream of or within mast cell activation; peripheral nervous system myelin maintenance; and regulation of cell population proliferation. Predicted to be active in cytoplasm. Is expressed in several structures, including integument; otic placode; pronephric mesoderm; pronephros; and visual system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4D. Orthologous to human NDRG1 (N-myc downstream regulated 1).

Ensembl:

ensembl_id ENSDARG00000032849

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029456 False 2301 mRNA 0.44 14 34959967 34970312
TCONS_00029457 False 2353 mRNA 0.45 16 34959967 34979837
TCONS_00029458 True 849 lncRNA 0.46 9 34966757 34979824

Neighbor

gene id symbol gene type direction distance location
XLOC_014932 sla1a coding downstream 32766 34913855 ~ 34927201 (-)
XLOC_014931 ctnnal1 coding downstream 86401 34751687 ~ 34873566 (-)
XLOC_014930 elp2 coding downstream 217527 34691645 ~ 34742440 (-)
XLOC_014929 NA coding downstream 272415 34660712 ~ 34687552 (-)
XLOC_014928 NA coding downstream 676959 34281886 ~ 34283008 (-)
XLOC_014934 si:rp71-45k5.2 coding upstream 14596 34994433 ~ 34995629 (-)
XLOC_014935 zgc:113424 coding upstream 18192 34998029 ~ 34999379 (-)
XLOC_014936 si:rp71-45k5.4 coding upstream 21416 35001253 ~ 35010342 (-)
XLOC_014937 bmp8a coding upstream 39467 35019304 ~ 35035857 (-)
XLOC_014938 macf1a coding upstream 60065 35039902 ~ 35340027 (-)
XLOC_014711 CR382300.3 misc downstream 15231212 19728690 ~ 19728755 (-)
XLOC_014927 NA non-coding downstream 729682 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 981973 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1173264 33782783 ~ 33786703 (-)
XLOC_014942 BX957241.1 non-coding upstream 440998 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 1730661 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1849114 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2248073 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2542740 37522577 ~ 37569033 (-)

Expression


Co-expression Network