XLOC_014934 (si:rp71-45k5.2)


Basic Information

Item Value
gene id XLOC_014934
gene name si:rp71-45k5.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34994433 ~ 34995629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029459
TTAAACCAACAAATATTTCAACAACCTTCTTTCAGCATGCAGGTCTGTTTTGATGTGGGCTATCCATAAGTAATCGCTCGCCGTTAACACCTTTTTTATGAATGGCACTTATTAATGGTCTCATTAGCACTTGTAGACCCACTGAAAGACACAGTCTGTATAAATGAAGCCTGTTTTTATCGGTCTTTCTGAGTTTGGATCTGAAGCTCATCATGACTAACGGAGAGACCGCAGAGTTCAGCAGTTTTCTGGCGCAGTCCAGTGGCGCTCCGAGAAGGAGATTGAAGCAGTGTGCAGCAGGAACATACACCGGGCTCATTGCATATGCAATTCAAGAATCACCGGACAAGAAGCTCACATTCAAAGAGATAATGACGAAGCTGGAACCATTTGTGTTTGGAGAAAAAAGGAGCATTGAGAACAACATCAGAGTCTGTCTATCGTCGAACAAGTGTTTTGTGAAGGTGCCAGTCGATCCAGATTATCCAAATCCCAAAAAGAATTACTGGAAAGTGGACGAAAATGGCATTACTCCAAAAATGCTCCGCCGACATTTCAAACACATTATGCACATGTTTCCTGGTCTTATGGCACGTGGAGATTATTCACGTGTTCATGATGACACACTCGTGCCAGTCTGCAAGGCTACAGAAAATAAAAGCGAAGTCAAGTTTACAGGCCCGTTCTCCATTGAATCTTTGCTAAAGAGTGACCATGGAGTGAAACGCATGCGCAGTACGCAGATGGAGGAACATCCACACTACAGAGAAGCGCAGTGTGCAGCGAcaaagagaaaacacatgtaTGCTGCAGTGGAGTGTTTTTACCCTGTTTCAGCAGAAGGAAACCACTTAGTCTCGACGAAAAGGCCTCGACTATCTTCAGGACCTCAGTTAGGACTGTTTTTCCTTCAGCAGATCCAGTATGATCGTACTCTCTTTAGCTCTCCTCTAATGTTCAATACATTTGTGAGCTGGTGAACAACGAGAAAGATCTTATGTAAATAG

Function

symbol description
si:rp71-45k5.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-753 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDARG00000093129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029459 True 1007 mRNA 0.43 3 34994433 34995629

Neighbor

gene id symbol gene type direction distance location
XLOC_014933 ndrg1a coding downstream 14596 34959967 ~ 34979837 (-)
XLOC_014932 sla1a coding downstream 67232 34913855 ~ 34927201 (-)
XLOC_014931 ctnnal1 coding downstream 120867 34751687 ~ 34873566 (-)
XLOC_014930 elp2 coding downstream 251993 34691645 ~ 34742440 (-)
XLOC_014929 NA coding downstream 306881 34660712 ~ 34687552 (-)
XLOC_014935 zgc:113424 coding upstream 2400 34998029 ~ 34999379 (-)
XLOC_014936 si:rp71-45k5.4 coding upstream 5624 35001253 ~ 35010342 (-)
XLOC_014937 bmp8a coding upstream 23675 35019304 ~ 35035857 (-)
XLOC_014938 macf1a coding upstream 44273 35039902 ~ 35340027 (-)
XLOC_014939 ndufs5 coding upstream 361567 35357196 ~ 35361556 (-)
XLOC_014711 CR382300.3 misc downstream 15265678 19728690 ~ 19728755 (-)
XLOC_014928 NA non-coding downstream 711425 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 764148 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 1016439 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1207730 33782783 ~ 33786703 (-)
XLOC_014942 BX957241.1 non-coding upstream 425206 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 1714869 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1833322 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2232281 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2526948 37522577 ~ 37569033 (-)

Expression


Co-expression Network