XLOC_014936 (si:rp71-45k5.4)


Basic Information

Item Value
gene id XLOC_014936
gene name si:rp71-45k5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35001253 ~ 35010342 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029461
AAATGATGGCAATATAATAAACGCCTCAAATATATAACGAGCAGTCGGATTGTCCAGTGTAATTCTACAGTGagttacttttattttgacaagtGAGCTCACAAACACTACGCGGAAGTTATTTAAACCGTTTCCGTAGCAAAAAGGCAAAAATGGCAGAACGAGGATACAGTTTTTCTCTCACAACATTTAGCCCGTCTGGCAAACTGGTGCAGATTGAATATGCTCTGGCCGCAGTAGCAGCTGGTGCCCCGTCTGTAGGAATCAAAGCATCAAATGGAGTTGTGCTGGCAACAGAGAAGAAACAAAAGTCCATACTGTACGATGAACAGAGCGTGCACAAAGTTGAACCGATAACCAAACACATTGGCATGGTGTACAGTGGAATGGGCCCCGATTACAGGGTGCTGGTCAGAAGGGCAAGAAAGCTGGCTCAGCAGTATTTCCTGGTCTATCAAGAGCCGATCCCCACAGGCCAGCTGGTACAGAGAGTGGCTTCTGTCATGCAAGAATACACACAGTCAGGAGGTGTACGCCCATTTGGAGTGTCTCTCCTTATCGCTGGTTGGGACGAAGACAGACCATACTTATTTCAGTCAGACCCATcgGGAGCATACTTCGCTTGGAAAGCCACAGCAATGGGAAAGAACTATGTGAATGGAAAAACGTTCCTTGAAAAAAGATATAATGAAGATCTGGAACTTGAAGATGCTATACACACTGCCATCTTAACTTTGAAGGAAAGTTTTGAAGGTCAGATGACAGAAGACAACATTGAGGTGGGCATTTGTAATGAAGCAGGGTTTCGCAGACTGTCGCCCGCTGAGGTGAAGGATTACCTGGCAGCAATTGCTTAAAAACTACAGCACTACAACTGCTTACACAGTTTCGCATTTCggtttggttgtttgtttaaattctgcaTTTTTATTATCTGTACATCTGTGTAACTGAtttctttataaaaataatacacatCCTCGACAAATGACAACAATGGCTTTCTTTTCTGTGACCTTTCTACCTGACTATAATTAAGCCACATTGCCAACTGTTCAATTAGTAAAAATAATTTCAGAGTCAATAAATGTGTCTTTTGAGGCCTGCTTAGTTGCAGCATTCTCCATCATAATAGGATCTTTCCCTGAGGCTCTGTTTATGTACatttttcaacaacaacaacaaaaaatgtgctggaaaaaaagCATTACTTTACTCCAAAGTGTTTAACAAAGTCTGAAAGGCTGTAAACCTCTCCATATCCCACTCGGGGATCCATGCAGATGAAGTCATCAAGATTCATTTTGGATTCTGAAAAGGACACGTTATACATGAAAGTGGAAGAAGAAATCAAATTatagtatttactgtatataaatcTGCAATAGAAAACAAACCTGGTGTCTCTAAACATGGATATGCTGGAGGTGGCATACGCCAATTCCCATCGGAGTCCTTCATATGAGACCGATCAGAAGCAAACTCCTTCAAATAAGTGTCCCCGGGTATGACTCGaagtttcctaaaagagcaaaCAACACTTTGATTACATTCAACTAAGActggctattattattataagggtCAAAGACATAAAGGAGTTTAagcatttgttaaaaaatatatatataaaaataatattatttaatgcaaaaGTAAATTAATTGACTATTGTCCATCACCACAATTTACATAAGATGACCTCTAAAATGTAGTTAAGTGTAACAGTAGTTTAAAATACTAAgttatatttaaaacaagaataatGTGAGGCCATACTAAATGGATAACAATGCAGCCTCAAAATactaattcatattaaaatcttcATTCAATTTTGTCCTCACATTTTATGATGTGCTTttcttttataaatttattaagtACTTGTTACACTTATGTTATTTCATCTTTTGTAGAATGCAGATTAGACCAGATAATACTTGCCTCCAGTAAGCAGGTTTCAAATGCTTGTCAGACTGAAAGGCCTCCATTGAATAAACGTCAAGCGAACAAGGAAATGGAAGAATGGTGTCTAAATCGTAAATGAAGCTCGGTCCTTGTTTACTTGCGTGTAGAAGAATAACATGGTAATCCTAAatggaaaacaacatttttatatcAATTAGAGACTACCATAAAATATGCATAGTTTTTATACATATAAAGTTCCTACCCAAATTACTGGTTCATCCCCTCGACTGGACTTTTGTTTCCAAATAGGTATCTGAAATATTACACAATTtttaacacacatacatactataTATACACTCATTGGCCCCTTTTGTttggcacaccttactagtaccgggttggaccctcttttgtctttagaactgccttaatcctttgtggcatagattcaacaaggtactggaaatattcctcaagagattttggttcatattcacatgatagcattacacagttgctgtggatttgttggctgcacatccgtgatgcgattctctcattccaccacatcccaaaggtgctctactgaaTTGAGAGCCGGTGACTGTGGAAGTCATTTGATTACAGAACTTCATGTCATGTTTtacaaaccagtctgagatgatttgcgttttatgacatggtgcgttatcctgctggaagtagccatcagaagatgggtacactggtcataaaggcatggacatggccagcaacaatactcaggtaggctgtggcgttgacacaatgcttaattggtactaatgggcccaatgtgtgccaagaaaataccccccatgccattacactaccaccacctgaaccgttgatacaaggcaggatggattcatgctttcatgttgctgacgcTAAATTCttaccctaccatccgaatgttgcagcagaaattgagacttatcagaccagacaacgcttttccaatcttctattgttcaattttggtgagccagtgtgaaatgtagcctcagtttcctggtctttgctgacaagagtggcacccatgtggtcttctgctgctgtagcccatctccTCAAGGTTCGAGGTTCAAAGTTACTggaatcacctttctttcccattcttatgcttggtttgaactgcagctgatcgtcttgaccatgtctacatgcctaaatgcattgagttgctgccatgtgattggcttattttTGCGTTGAGCAGCAGTTGgaaagctgtacctaataaagtgaccggtgactgtatacgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatatatatatatatatatatatatatatatacatatatatatatatatatatatatatatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatataacagaaaactgtacatttcattaaatgtaaaatacttgtGTGGAGATGAAGCTCACCTTCTTTCTTTCATTAGATATAAATACTGCATACACCTCTTCCAAAGGACAATGTCTCTGATTCTTGATATATTCACACAATTTCCACACATTCTCCTCACtgcaacaaacatttaaatacgTGTATGAATACGGTAcgttttaaatttgaaataatgTTACAGGTATTATCGCATTTACCAGTAACAGCTGGTGTAAACACATTGGTTTCCGGACGGGGTGATCACTTTATATTCAGACGAAGCGctttcttcattcattctttccttcCTTATATACGTGTATATACAGTAGGTTTACGCGGACTTCCAGTTATAACGACATGACAAAAGAATACATGTGTATAATGataccatagatatttacattaatattacaATGAAGCGATTCGCGTTGCAACCGCACTGTTGCTTGTTACAATGTATCTTGTCCGTAAGGAACTTCAGGGGATTTGTCGTTCCGGCGAGACAGGTGATGCGCGAACATTCACTCCTTATGTGAATTGCAAATGTAGCACTTGCACGATTATCAGCATAAATATTAAACAGTCTAACTTTCATAAAGCATAAGTAGAAAACACGTTAGCGAAAGATAACGTGCAGTTAGGCATCGTTCTCAACTCAATACAATTAGCCAATGTATTGGTTTCTAATTTCAGAGTATCTGATTGTATTTTGTTGCACGTTAATTCGTTTTTTGCCACATACTTGTATAAATGTTTGTGGATatctataaattttttttgtgaactatattttgttttaaactgaaaatgtgtttctgtttctaATGCATGTTTATCTCAAACCCTTTCATTTCTCTATACATGTTCACTCATTATAGAGTCCTGACAATATGTTTCAAACTATCAGTCCATTCAAATTGTCTACCAAAACCACAGTATGAGTTAATATTAAGGAGGTTAGCACATAGTCTAAATGAATAACTATGTAGTCTTGTCAAAAGTTGTCTTGGTTCACACTTGCTTTGGTCATAAAAAGCCACAAAATGTTCTAAATATATATGCGTACAAGATGTCTTTTGTAAAATAAGGTAAATATTTTTTTGGATTAAATATATCACATTCTGAgagatgtatttatttacttgtacaactgttttattacactttttattgttttcataggCTAAATCCCCATTTCTGAGCCACAAATAAACAGCTCTTTACACTTTTACCGTTTAAGAATCCACTATTTGCTAACgtgtttgtttaaaatgaaatttgatAACATTCAAATACTTATGATGTTATAAAGTAAGCTAAACCAACAAATATTAACCATATTCTTTTAACAAGATGTATAGGGCCACCTATGTTTTGAGGTGTAGCCATCAGAAAAAGCCCACCATTAACACCTCGTTTTTAGGAATGTCTTTTACTAATGATCTCATTAGCACTTGTGGACCCACTGATTTGAGAGCTGGTGAACTGGAAAAACCACGAATAAAATAGTTGAAATTGCac
>TCONS_00029462
AGTTATTTAAACCGTTTCCGTAGCAAAAAGGCAAAAATGGCAGAACGAGGATACAGTTTTTCTCTCACAACATTTAGCCCGTCTGGCAAACTGGTGCAGATTGAATATGCTCTGGCCGCAGTAGCAGCTGGTGCCCCGTCTGTAGGAATCAAAGCATCAAATGGAGTTGTGCTGGCAACAGAGAAGAAACAAAAGTCCATACTGTACGATGAACAGAGCGTGCACAAAGTTGAACCGATAACCAAACACATTGGCATGGTGTACAGTGGAATGGGCCCCGATTACAGGGTGCTGGTCAGAAGGGCAAGAAAGCTGGCTCAGCAGTATTTCCTGGTCTATCAAGAGCCGATCCCCACAGGCCAGCTGGTACAGAGAGTGGCTTCTGTCATGCAAGAATACACACAGTCAGGAGGTGTACGCCCATTTGGAGTGTCTCTCCTTATCGCTGGTTGGGACGAAGACAGACCATACTTATTTCAGTCAGACCCATcgGGAGCATACTTCGCTTGGAAAGCCACAGCAATGGGAAAGAACTATGTGAATGGAAAAACGTTCCTTGAAAAAAGATATAATGAAGATCTGGAACTTGAAGATGCTATACACACTGCCATCTTAACTTTGAAGGCGATTTTGAAGGTCAGATGACAGAAGACAACATTGAGGTGGGCATTTGTAATGAAGCAGGGTTTCGCAGACTGTCGCCCGCTGAGGTGAAGGATTACCTGGCAGCAATTGCTTAAAAACTACAGCACTACAACTGCTTACACAGTTTCGCATTTCggtttggttgtttgtttaaattctgcaTTTTTATTATCTGTACATCTGTGTAACTGAtttctttataaaaataatacacatCCTCGACAAATGACAA

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-941 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Orthologous to human PSMA2 (proteasome 20S subunit alpha 2).

Ensembl:

ensembl_id ENSDARG00000035679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029461 False 4886 mRNA 0.37 8 35001253 35010342
TCONS_00029462 True 877 mRNA 0.44 8 35005145 35010226

Neighbor

gene id symbol gene type direction distance location
XLOC_014935 zgc:113424 coding downstream 1874 34998029 ~ 34999379 (-)
XLOC_014934 si:rp71-45k5.2 coding downstream 5624 34994433 ~ 34995629 (-)
XLOC_014933 ndrg1a coding downstream 21416 34959967 ~ 34979837 (-)
XLOC_014932 sla1a coding downstream 74052 34913855 ~ 34927201 (-)
XLOC_014931 ctnnal1 coding downstream 127687 34751687 ~ 34873566 (-)
XLOC_014937 bmp8a coding upstream 8962 35019304 ~ 35035857 (-)
XLOC_014938 macf1a coding upstream 29560 35039902 ~ 35340027 (-)
XLOC_014939 ndufs5 coding upstream 346854 35357196 ~ 35361556 (-)
XLOC_014940 rnf19b coding upstream 369557 35379899 ~ 35400819 (-)
XLOC_014941 ak2 coding upstream 408341 35418683 ~ 35428914 (-)
XLOC_014711 CR382300.3 misc downstream 15272498 19728690 ~ 19728755 (-)
XLOC_014929 NA non-coding downstream 313701 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 718245 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 770968 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 1023259 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1214550 33782783 ~ 33786703 (-)
XLOC_014942 BX957241.1 non-coding upstream 410493 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 1700156 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1818609 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2217568 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2512235 37522577 ~ 37569033 (-)

Expression


Co-expression Network