XLOC_014937 (bmp8a)


Basic Information

Item Value
gene id XLOC_014937
gene name bmp8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35019304 ~ 35035857 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029463
ATGGACAGACACGAGGTTGAGATTGTGTCCTCAAAACACCAGAGCAGAGGGAGGAAACGAACCCGACTTTTCCCTCCGTCCATCTTCCTCCCTCTGTGTGTATTGCTGTGTGTTTGGGGTCAGGTGGAAGGAGTGGTTCATTCCAGCTTTCGTCGGCTCAGCGGTCGGGAAAAGAAGGAGATGCAGAAGGAGATTTTATCCATTTTGGGTCTCCCCGGGCGGCCTAGGCCTCACCCGCCGCTGCGGCCGCCTTCCTCCGCCCCGCTCTTCATGCTGGACCTTTATCATGCGGTGTCGTCTGAGGCTGATGACAGGCCGGGTTTGGGTTTCACTCCGGAAGTGGTCAGTCATGCCGCACTGCCCACTTTAAGCACACACATGCCGCCGCTTGGTACTGTGGTCAGTGAGGCCGACACGGTTATGAGCTTCGTGAACCTGGTTGAACAGGAGAAGGATCTGCTCCAGCCTCGGCCATACTGGAAGGAGTTTCGCTTCGATCTCACTCCGCTTCCTCAGGGAGAGACGGTCACCGCTGCTGAGTTTCGCATCTATAAAACTCTTACCATGGGTTGGCGTTTCAACCACACCCTCCATATCTCTGTCTATGAAATCCTGAGGGAGAAAAGACACAGGGAGCCTGAGCTGGTGCTGCTGGACATGCAGTCTGTACCTGCGGGTCAGGAGGGTTGGCTGGCATTTGATGTGACTTCTGCAAGCAATCGCTGGCTTCTCCATCCTCGGAGCAACCTGGGCATCCGCCTTTATGTGGAAACTGAGGAGGATCACAGGTCATGGGTGGGTCTGGTGGGTCGGCGTGGGCCTCGCTCTAAGCAGCCGTTCATGGTGACGTTCTTCAGAGCTAGTCAAGCCCCTTGCCGCCCACCGCGTGCTCTGAAACACACCAATCAACGCAAGAAAAAAACTAAGTATGACCTGCCACACCCAAACAGACCCGGCATATTTGACCAAAATCATAGCAGTGGACGGCAGGCCTGTAAGAAGCATGAACTCTACGTCAGCTTCAGCGACCTTGGCTGGAAGGACTGGGTTTTGGCCCCTACAGGTTATTCTGCGTATTATTGTGACGGGGAATGTGATTATCCTCTGGGCTCTTGTATGAATGCCACAAACCATGCCATGATCCAGCTGCTGGTTCATCTTCTGAGACCAGATGAAGTGCCTAAAGCCTGCTGCGCTCCAACCAAACTCAGTCCCATCGCTGTGCTCTTCTATGATGACAACAACAACGTTATTCTAAAGAAACAACGAAATATGGTGGTCAAGAATTGTGGCTGTTTATAGCCCCTCACGCATTCATGTTTTAAATCTGACACGATGTAGATTTGTTATAATACTCACAGCCACCATTTGTAATATACagtcattaaaatattatatagccAAACGAGCGCTTCTGCCTGTCCCAAATGATTGACAAATGATATTTATTAAAGCGTCATGATGGTTTATCAGCATGTGACCATTTTTTGGAGGATTTAAGAGAGAATTTAAGGTTGGAATCCATCCCAtaataaaaatctacttttcacaTA

Function

symbol description
bmp8a Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in caudal fin. Orthologous to several human genes including BMP8A (bone morphogenetic protein 8a).

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0070700 BMP receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030912-13 Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in caudal fin. Orthologous to several human genes including BMP8A (bone morphogenetic protein 8a).

Ensembl:

ensembl_id ENSDARG00000035677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029463 True 1553 mRNA 0.50 7 35019304 35035857

Neighbor

gene id symbol gene type direction distance location
XLOC_014936 si:rp71-45k5.4 coding downstream 8962 35001253 ~ 35010342 (-)
XLOC_014935 zgc:113424 coding downstream 19925 34998029 ~ 34999379 (-)
XLOC_014934 si:rp71-45k5.2 coding downstream 23675 34994433 ~ 34995629 (-)
XLOC_014933 ndrg1a coding downstream 39467 34959967 ~ 34979837 (-)
XLOC_014932 sla1a coding downstream 92103 34913855 ~ 34927201 (-)
XLOC_014938 macf1a coding upstream 4045 35039902 ~ 35340027 (-)
XLOC_014939 ndufs5 coding upstream 321339 35357196 ~ 35361556 (-)
XLOC_014940 rnf19b coding upstream 344042 35379899 ~ 35400819 (-)
XLOC_014941 ak2 coding upstream 382826 35418683 ~ 35428914 (-)
XLOC_014942 BX957241.1 coding upstream 384978 35420835 ~ 35420951 (-)
XLOC_014711 CR382300.3 misc downstream 15290549 19728690 ~ 19728755 (-)
XLOC_014929 NA non-coding downstream 331752 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 736296 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 789019 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 1041310 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1232601 33782783 ~ 33786703 (-)
XLOC_014948 NA non-coding upstream 1674641 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1793094 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2192053 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2486720 37522577 ~ 37569033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_05813838_05819498 BMP8A coding CI01000054 null 5812764 ~ 5819740 (+)